Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33360 494 / 3e-177 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G09480 92 / 1e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 89 / 5e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09510 81 / 3e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 77 / 1e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 76 / 3e-15 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT5G58490 76 / 3e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 75 / 5e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27250 74 / 9e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G45400 73 / 3e-14 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G127500 [exp] 517 / 0 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G218400 [exp] 85 / 6e-18 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Potri.009G057500 [exp] 83 / 1e-17 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G004100 [exp] 82 / 1e-17 AT2G33590 438 / 1e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 81 / 6e-17 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 79 / 2e-16 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 79 / 4e-16 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045800 [exp] 77 / 6e-16 AT1G15950 350 / 1e-121 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.009G057600 [exp] 77 / 7e-16 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021740 [exp] 502 / 3e-180 AT4G33360 551 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10041863 [exp] 379 / 9e-132 AT4G33360 416 / 3e-146 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10041651 [exp] 85 / 2e-18 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 86 / 5e-18 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10008668 [exp] 84 / 5e-18 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 82 / 2e-17 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010311 [exp] 81 / 1e-16 AT2G26260 664 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10013413 [exp] 80 / 4e-16 AT2G26260 724 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10019732 [exp] 78 / 4e-16 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 77 / 2e-15 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.002G127400.1 pacid=42778094 polypeptide=Potri.002G127400.1.p locus=Potri.002G127400 ID=Potri.002G127400.1.v4.1 annot-version=v4.1 ATGAAGAAGATAGTTGTGACCGGTGCATCTGGTTTCGTAGGCGGGGTACTGTGCCACACCCTCCTTAAACAGGGCCACTCCGTCCGGGCCTTAGTCCGCC GAACCAGCGACTTGTCCGGCCTCCCTTCGCCCTCTACGGGGGAGAACTTTGAACTCGCCTATGGTGACGTTACCGACTATCGGTCACTCCTGGATGCCAT CTTCGGCTGCGACGTGATCTTCCATGCTGCCGCCGCTGTCGAGCCCTGGCTTCCAGATCCTTCTAAATTCTTCTCCGTGAACGTAGGAGGATTAAAGAAT GTGGTGCAAGCAGCTAAAGAGACAAAAATGATAGAGAAGATTATATACACTTCTTCAATGGTGGCCCTTGGATCAACTGATGGATATGTTGCTGATGAGA GCCAAGTACATCACGAGAAGTATTTCTATACAGAGTATGAGAGATCAAAGGTAGCAGCTGACAAGGTTGCTTCACAAGCAGCAGCAGAAGGATTGCCAAT TGTGACCCTTTATCCTGGTGTTGTTTATGGTCCAGGGAAACTCACAACTGGCAACGCTCTGGCTAAAATGTTGATTGATCGATTCGCTGGACGTTTACCG GGATATATAGGGCGTGGAAATGATAGGCTTTCCTTTTGTCACGTTGATGATGTAGTTGGAGGTCATATTGCAGCAATGGACAAAGGTCGACTGGGTGAAA GATATCTACTCACAGGAGAAAATGCATCGTTCTCACGTGTGCTTGATATAGCCGCTATCATCACTAGAACAGAAAAGCCAAGGTTTAGCATTCCTTTATG GGTAATTGAAGCTTACGGATGGCTGTCGATTCTTATTTTTCACTTTACAGGAAAGCTTCCACTTTTATGTCCACCGAGTGTGCATGTTCTGCGACACCAG TGGGAATATTCTTGCGAGAAAGCCAGAATAGAGCTGGATTACAATCCCCGAAGCTTGAAAGAAGGACTAGATGAGTTGCTACCGTGGTTGAAAAGCTTAG GGGCGATAACATACTGA
AA sequence Show only first row Show all	>Potri.002G127400.1 pacid=42778094 polypeptide=Potri.002G127400.1.p locus=Potri.002G127400 ID=Potri.002G127400.1.v4.1 annot-version=v4.1 MKKIVVTGASGFVGGVLCHTLLKQGHSVRALVRRTSDLSGLPSPSTGENFELAYGDVTDYRSLLDAIFGCDVIFHAAAAVEPWLPDPSKFFSVNVGGLKN VVQAAKETKMIEKIIYTSSMVALGSTDGYVADESQVHHEKYFYTEYERSKVAADKVASQAAAEGLPIVTLYPGVVYGPGKLTTGNALAKMLIDRFAGRLP GYIGRGNDRLSFCHVDDVVGGHIAAMDKGRLGERYLLTGENASFSRVLDIAAIITRTEKPRFSIPLWVIEAYGWLSILIFHFTGKLPLLCPPSVHVLRHQ WEYSCEKARIELDYNPRSLKEGLDELLPWLKSLGAITY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127400 [exp]	0	1
AT3G19480			D-3-phosphoglycerate dehydroge...		Potri.014G022800 [exp]	1.00	0.8281
AT4G12680			unknown protein		Potri.007G035400 [exp]	1.73	0.8147
AT5G14220		HEMG2, MEE61, P...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G333500 [exp]	3.74	0.8214
AT1G70100			unknown protein		Potri.008G192800 [exp]	10.72	0.7799
AT3G02100			UDP-Glycosyltransferase superf...		Potri.013G022800 [exp]	12.24	0.8070
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Potri.001G321600 [exp]	13.63	0.7520	SBP.1
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Potri.003G104000 [exp]	14.14	0.8145
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128600 [exp]	18.97	0.8043
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.002G121900 [exp]	23.34	0.8079	Pt-IFS1.53
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.007G056900 [exp]	23.81	0.8057

Compare expression of checked genes

Potri.002G127400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.