Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33360 531 / 0 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G09490 94 / 1e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 94 / 2e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 91 / 1e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G61720 90 / 5e-20 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 83 / 7e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 81 / 3e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G58490 81 / 4e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G45400 81 / 9e-17 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 77 / 1e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G127400 [exp] 543 / 0 AT4G33360 494 / 4e-177 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.009G057500 [exp] 86 / 1e-18 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 84 / 4e-18 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G030700 [exp] 83 / 1e-17 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G229500 [exp] 82 / 4e-17 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.011G031700 [exp] 81 / 6e-17 AT1G61720 428 / 1e-150 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G218400 [exp] 80 / 3e-16 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Potri.003G138400 [exp] 79 / 3e-16 AT5G42800 202 / 9e-62 dihydroflavonol 4-reductase (.1) Potri.006G178700 [exp] 78 / 3e-16 AT4G30470 416 / 1e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021740 [exp] 546 / 0 AT4G33360 551 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10041863 [exp] 402 / 6e-141 AT4G33360 416 / 3e-146 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024068 [exp] 92 / 2e-20 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10041651 [exp] 90 / 4e-20 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10041031 [exp] 87 / 3e-19 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10039595 [exp] 84 / 4e-18 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 82 / 3e-17 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 80 / 9e-17 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006141 [exp] 80 / 2e-16 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10009955 [exp] 79 / 4e-16 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.002G127500.1 pacid=42777552 polypeptide=Potri.002G127500.1.p locus=Potri.002G127500 ID=Potri.002G127500.1.v4.1 annot-version=v4.1 ATGAAGGCGCTGGTGACCGGTGCATCCGGTTACTTAGGCGGTAGACTCTGCCACGGCCTCCTTAAACAAGGCCACTCCGTCCGCGCCTTGGTCCGTCGCA CCAGTGACATCTCCGAGCTTCCTCCTCCCTCCAGCGGTGGAGTCTTCGAACTCGCATACGGTGACATTACCGACTACCAGTCTCTCCTGGATGCCTTCTC TGGTTGCCAAGTCATCTTCCACGCTGCCGCTATCGTCGAACCCTGGCTTCCAGATCCTTCAAAATTCTTCTCCGTTAATGTTGAAGGATTGAATAACGTG CTACAAGCAGCCAAAGAGACAGAAACAATTGAGAAGATCATATACACGTCGTCGTTTTTCGCACTTGGTTCCACTGATGGATATGTTGCTGATGAGAGCC AAGTGCATTGCGAGAAACGTTTCTGTACGGAATACGAGAGATCAAAGATGATTGCTGATAAGATTGCTTCACAAGCTGCGGCAGAGAGGGTGCCGATCGT GATGCTTTATCCTGGTGTTATTTATGGTCCAGGGAAGCTCACTACTGGTAATATAGTGGCTCAATTGCTCATCGAACGCTTTGCTGGACGTTTACCAGGA TATATCGGCTATGGGAATGATAAATTTTCCTTTTGTCATGTTGATGACCTGGTAGATGGTCATATTGCAGCAATGGACAAAGGTAGACAAGGTGAAAGAT ATCTACTTACAGGAGAAAATGCATCCTTCAAGCTTGTTTTTGATATGGCTGCTATTATCTCTGAAACAAAAAAGCCAAGGTTTAGCATTCCTTTATGCAT AATTGAATCTTATGGATGGTTATTGGTTCTTGTTTCTCGACTTACAGGAAACCTTCCTCTCATCAGTCCCCCGACTGTACATGTTCTAAGACATCAGTGG GAATATTCATGTGAAAAGGCCAAGACAGAGCTAGGTTATAATCCTCGGGGCTTGGAAGATGGACTGAAAGAGGTCCTTCCATGGTTGAAGAGCATGGGGG TGATCAAATACTGA
AA sequence Show only first row Show all	>Potri.002G127500.1 pacid=42777552 polypeptide=Potri.002G127500.1.p locus=Potri.002G127500 ID=Potri.002G127500.1.v4.1 annot-version=v4.1 MKALVTGASGYLGGRLCHGLLKQGHSVRALVRRTSDISELPPPSSGGVFELAYGDITDYQSLLDAFSGCQVIFHAAAIVEPWLPDPSKFFSVNVEGLNNV LQAAKETETIEKIIYTSSFFALGSTDGYVADESQVHCEKRFCTEYERSKMIADKIASQAAAERVPIVMLYPGVIYGPGKLTTGNIVAQLLIERFAGRLPG YIGYGNDKFSFCHVDDLVDGHIAAMDKGRQGERYLLTGENASFKLVFDMAAIISETKKPRFSIPLCIIESYGWLLVLVSRLTGNLPLISPPTVHVLRHQW EYSCEKAKTELGYNPRGLEDGLKEVLPWLKSMGVIKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127500 [exp]	0	1
AT5G40240			nodulin MtN21 /EamA-like trans...		Potri.015G073200 [exp]	3.60	0.7529
AT5G22820			ARM repeat superfamily protein...		Potri.009G151100 [exp]	5.47	0.7426
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.002G110800 [exp]	18.81	0.7236
					Potri.005G130601 [exp]	21.63	0.7186
AT5G63520			unknown protein		Potri.015G098700 [exp]	23.10	0.7096
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Potri.003G150450 [exp]	28.70	0.6897
AT5G51140			Pseudouridine synthase family ...		Potri.015G101300 [exp]	30.82	0.7152
AT4G03415			Protein phosphatase 2C family ...		Potri.013G144100 [exp]	31.46	0.6122
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258832 [exp]	32.24	0.6479
AT3G07940			Calcium-dependent ARF-type GTP...		Potri.003G198301 [exp]	38.40	0.6387

Compare expression of checked genes

Potri.002G127500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.