Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44250 501 / 1e-177 Protein of unknown function DUF829, transmembrane 53 (.1.2) AT2G15695 432 / 2e-150 Protein of unknown function DUF829, transmembrane 53 (.1) AT3G19970 51 / 9e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G031800 [exp] 748 / 0 AT5G44250 496 / 7e-176 Protein of unknown function DUF829, transmembrane 53 (.1.2) Potri.004G142000 [exp] 516 / 0 AT2G15695 537 / 0.0 Protein of unknown function DUF829, transmembrane 53 (.1) Potri.009G103500 [exp] 515 / 0 AT2G15695 528 / 0.0 Protein of unknown function DUF829, transmembrane 53 (.1) Potri.007G023000 [exp] 44 / 0.0002 AT2G18245 330 / 2e-110 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042660 [exp] 606 / 0 AT5G44250 464 / 3e-163 Protein of unknown function DUF829, transmembrane 53 (.1.2) Lus10021741 [exp] 602 / 0 AT5G44250 454 / 3e-159 Protein of unknown function DUF829, transmembrane 53 (.1.2) Lus10019874 [exp] 428 / 8e-149 AT2G15695 457 / 4e-160 Protein of unknown function DUF829, transmembrane 53 (.1) Lus10014042 [exp] 422 / 1e-146 AT2G15695 453 / 2e-158 Protein of unknown function DUF829, transmembrane 53 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05705 [poplar] [flax] DUF829 Eukaryotic protein of unknown function (DUF829)
Representative CDS sequence Show only first row Show all	>Potri.002G127600.1 pacid=42776889 polypeptide=Potri.002G127600.1.p locus=Potri.002G127600 ID=Potri.002G127600.1.v4.1 annot-version=v4.1 ATGAAGGAAATGTTGGGATTTGGAGGTAGATATTATTGGGGGAGAAGGGAAATGGAAAGAGAAGGGATAGTGGTGGTTTTTGCTTGGATGTCTAGTCAAG AAAGACATGTGAAAAGCTATGTTGACCTTTATGGGTCTCTTGGTTGGAATTCCCTTGTCTGTCACTCTCAATTTCTCAATATGTTCTTTCCTGAGAAGGC TGAAACTTTAGCATTTGACATCCTCAATGAACTTCTTGAGGAGCTAAAGATAAGGCCATACCCTATAGTCTTTGTGCCCTTTTCTGATGGTCCCAAAGCT TGCTTGTACAAGGTTCTCCAGATCATTGAGGGAAAGTGTGAAGTGCAACTGAATCCGGATGACTGTCAGCTGGTCAGAGACTGTATTTCAGGCCATATAT ATGATTCTAGTCCAGTGGATTTTACGAGTGATCTGGGGAGACGATTTGTTGTTCACCCATCTGTTCTTAAAATGTCTCGTCCGCCAAGAATACTATCCTG GATGGCAAATGGAATTAGTAGCAGTCTTGATGCTCTCTTCCTGAACAGATTTGAATCACAGCGTGCTGAGTATTGGCAGACTCTGTACTCCTCTGTTAGC ATGGGAGGGCCATATCTAATTTTGTGCTCAGAGAATGATGATCTTGCTCCGTATCAAGTCATTTGCAATTTTGCTCAAAGACTAAAAGAACTGGGTGGTG ATGTAAAGCTTGTGAAAATGAATGGCTCACCTCATGTAGGTCATTATCGACTTTATCCTGTTGACTACAAGGCTTCTGTCACTGAGCTCCTCTGTAAGGC AGCTGCAATTTTTTCCCAGAGAATTCAACGACTTGAAGGAGAAAAGATGGGTTTCGAAGGGACACATGATCAGATCTCTGAGCCAATTAGTGACCTGAGG AAAGCAACTGTTAATCCACAACATAGTTTTCGTGGAGTTACTTTTGCACCAAGTGATCATTTCTTTATGCCAAGCTCAGTTGAGTATTACGAGGGTAGAG ATGTTGAGTCCTTGCAAGATGAACACAAGGAAAGTTTGGTTCAGTTGCGAAGCCCTCCAACTATCAATCCACATGGAGTTCTTAGTCAAATCCTTTTCGA TGTGTGTGTTCCCAAGAATGTTGAAGGTTGGGATTTAAGGTCATCAGCTTCCTTGAACAGACACCCACTTAATCCCTCGCGAAGGCATGCTCCATTTAAT CCAATGAAATGTATACGCCGTTCAAGACTGTAA
AA sequence Show only first row Show all	>Potri.002G127600.1 pacid=42776889 polypeptide=Potri.002G127600.1.p locus=Potri.002G127600 ID=Potri.002G127600.1.v4.1 annot-version=v4.1 MKEMLGFGGRYYWGRREMEREGIVVVFAWMSSQERHVKSYVDLYGSLGWNSLVCHSQFLNMFFPEKAETLAFDILNELLEELKIRPYPIVFVPFSDGPKA CLYKVLQIIEGKCEVQLNPDDCQLVRDCISGHIYDSSPVDFTSDLGRRFVVHPSVLKMSRPPRILSWMANGISSSLDALFLNRFESQRAEYWQTLYSSVS MGGPYLILCSENDDLAPYQVICNFAQRLKELGGDVKLVKMNGSPHVGHYRLYPVDYKASVTELLCKAAAIFSQRIQRLEGEKMGFEGTHDQISEPISDLR KATVNPQHSFRGVTFAPSDHFFMPSSVEYYEGRDVESLQDEHKESLVQLRSPPTINPHGVLSQILFDVCVPKNVEGWDLRSSASLNRHPLNPSRRHAPFN PMKCIRRSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44250			Protein of unknown function DU...		Potri.002G127600 [exp]	0	1
					Potri.002G169550 [exp]	18.84	0.6637
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	20.24	0.6357
					Potri.005G098650 [exp]	22.04	0.6396
AT3G24110			Calcium-binding EF-hand family...		Potri.017G054902 [exp]	25.09	0.6636
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002800 [exp]	26.83	0.5672
AT3G24570			Peroxisomal membrane 22 kDa (M...		Potri.006G242700 [exp]	34.64	0.5796
AT1G20925			Auxin efflux carrier family pr...		Potri.002G003500 [exp]	35.09	0.6008
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Potri.007G011700 [exp]	40.91	0.5726
AT4G34280			transducin family protein / WD...		Potri.009G092500 [exp]	41.35	0.6132
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Potri.007G144701 [exp]	42.49	0.6092

Compare expression of checked genes

Potri.002G127600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.