Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47490 404 / 6e-139 ATRBP47C RNA-binding protein 47C (.1.2) AT1G47500 399 / 1e-136 ATRBP47C' RNA-binding protein 47C' (.1) AT3G19130 399 / 1e-136 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 396 / 1e-135 ATRBP47A RNA-binding protein 47A (.1) AT1G11650 331 / 2e-110 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G27000 330 / 6e-110 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G19350 327 / 2e-108 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G54900 325 / 2e-108 ATRBP45A RNA-binding protein 45A (.1) AT1G54080 137 / 3e-36 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 133 / 1e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034600 [exp] 556 / 0 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.004G143400 [exp] 420 / 7e-145 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 419 / 1e-144 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.009G054400 [exp] 347 / 8e-117 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G423400 [exp] 347 / 2e-116 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G138400 [exp] 345 / 4e-116 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G017200 [exp] 344 / 1e-115 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G139300 [exp] 133 / 1e-34 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 129 / 5e-33 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021754 [exp] 496 / 1e-174 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10012070 [exp] 419 / 4e-145 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10012071 [exp] 398 / 5e-138 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10014029 [exp] 386 / 3e-133 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10019889 [exp] 375 / 4e-129 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10027911 [exp] 369 / 6e-127 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10031844 [exp] 346 / 3e-116 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 344 / 1e-115 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018345 [exp] 343 / 2e-115 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043106 [exp] 260 / 3e-82 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.002G128100.1 pacid=42779682 polypeptide=Potri.002G128100.1.p locus=Potri.002G128100 ID=Potri.002G128100.1.v4.1 annot-version=v4.1 ATGCAATCCAGGGGTTCCGACTCACAGCCACAACAAGAGCAGAATAAACGGCAGCAGCAGCAAGGACAACAACCGCCGCCTCCACCGCAACAACAACAGT GGATGCCTATGCAGTACCCGGTGGCGGCTATGGTAATGCAGCACATGCCGCCTCAACATTATGGACTGCCGCCTCCACAACACTATATGGCTGCTACTGC GTACCACCAGTACCAGCATCACCACCATCTCCCGCATGTACAGCAGCAGCAGCAGCAGCAAAGAGAAGGATCCAGTGGAGATAATAAAACTATATGGATT GGTGACTTGCATCACTGGATGGATGAAAATTATTTACATACCTGCTTTGCTTCTACTGGCGAGATTGCTTCTATCAAGGTTATTCGCAGTAAGCAGACAG GTTTGTCCGAGGGCTATGGGTTTGTGGAATTTTTTACACATGCCACAGCTGAGAAAGTTCTACAGAACTATGGTGGCATTCTGATGCCTAACACAGAACA GCCTTTCCGCCTCAATTGGGCAACATTTAGCACGGGTGACAAGCGATCAGATAATACTCCTGATCTTTCTATTTTTGTAGGAGACTTAGCTGCAGATGTT ACTGATAGTTTATTGCAAGAAACTTTTGCGAGCAAATATCAGTCTGTTAAATCTGCAAAAGTTGTATTTGATGCCAATACTGGTCGTTCAAAAGGTTATG GTTTTGTGAGGTTTGGAGATGATACTGAAAGAACACAGGCAATGACTGAAATGAATGGTGTATATTGTTCGAGCAGGCCTATGCGTATTGGTGCTGCAAC CCCCAGGAAGTCCTCTGGATATCAGCAACAAGGCGGATATGGATCAAATGGTGCTTCTTCCCAAGGCTTCCAATCGGATGGTGATTCCAGCAATGCAACA ATATTTGTTGGAGGGCTTGACCCTAATGTCACTGATGAAGATCTCAAGCAGCCTTTCTCTCAGTATGGTGAGATAGTGTCCGTTAAAATACCAGTCAGTA AAGGATGTGGGTTTGTACAATTTGCCAACAGGAATAATGCGGAAGAAGCATTGCAGAAGTTGAATGGAACAGTAATTGGCAAGCAAACTGTGCGTCTTTC TTGGGGTCGCAATCCAGGACATAAGCAGCATAGAGCAGATTTCAGCAGTCCCTGGAATGGGGCATACTATGGAGGGCAGGTTTATGATGGTTATGGATAT GCTCTGCCACCACCTCATGATCCAAGCACGTATGCTGCGGCATATGGGGCTTACCCTATGTATGGCAACCACCAACAGCAAGTAAGCTGA
AA sequence Show only first row Show all	>Potri.002G128100.1 pacid=42779682 polypeptide=Potri.002G128100.1.p locus=Potri.002G128100 ID=Potri.002G128100.1.v4.1 annot-version=v4.1 MQSRGSDSQPQQEQNKRQQQQGQQPPPPPQQQQWMPMQYPVAAMVMQHMPPQHYGLPPPQHYMAATAYHQYQHHHHLPHVQQQQQQQREGSSGDNKTIWI GDLHHWMDENYLHTCFASTGEIASIKVIRSKQTGLSEGYGFVEFFTHATAEKVLQNYGGILMPNTEQPFRLNWATFSTGDKRSDNTPDLSIFVGDLAADV TDSLLQETFASKYQSVKSAKVVFDANTGRSKGYGFVRFGDDTERTQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQGGYGSNGASSQGFQSDGDSSNAT IFVGGLDPNVTDEDLKQPFSQYGEIVSVKIPVSKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPGHKQHRADFSSPWNGAYYGGQVYDGYGY ALPPPHDPSTYAAAYGAYPMYGNHQQQVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Potri.002G128100 [exp]	0	1
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Potri.014G034600 [exp]	1.73	0.8052
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.004G169500 [exp]	3.46	0.7962
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.015G023200 [exp]	8.12	0.6964
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Potri.016G119700 [exp]	17.32	0.7307
AT2G46230			PIN domain-like family protein...		Potri.014G092600 [exp]	17.97	0.7005
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132551 [exp]	23.30	0.7770
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156300 [exp]	27.16	0.6815
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.002G086000 [exp]	29.73	0.6599
AT3G03060			P-loop containing nucleoside t...		Potri.001G458200 [exp]	32.31	0.7198
AT1G14810			semialdehyde dehydrogenase fam...		Potri.008G135700 [exp]	36.22	0.6913

Compare expression of checked genes

Potri.002G128100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.