Plant FIBer expression Database

Potri.002G128201 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34310 514 / 2e-173 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G034100
[exp]
775 / 0 AT4G34310 1291 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021747
[exp]
602 / 0 AT4G34310 953 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10042665
[exp]
586 / 0 AT4G34310 984 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.002G128201.1 pacid=42776742 polypeptide=Potri.002G128201.1.p locus=Potri.002G128201 ID=Potri.002G128201.1.v4.1 annot-version=v4.1
ATGACTGCTTTAATGGCACCTGAGAGATCTGTTAGATGGCATGGGAGCTTGGTGGCCCAATTGCTGTTGGAGGATCGCAATCTTCCTTTGAATGATTCTG
TTTCTGATTGGAGTTTCAGTCTTCTGGCTACTATTTCACAGGCAAGCAAAAATGATGATATCCCTTTGGCTCAGATGGCTTTGTCTGCCCTTTTGCTTTC
TGTTGAAAGAAGTCCAGAGGCAAGAAAGATAGTGATAGAGAAAGGTCTTCTGCTCATGAGAGACACAGCTAAGCGGACAACAAATCACAAGCAGGTACAA
GAAGCATTAGCGAAGGCATTAGAGTTGCTTTCTACCAGTGATGTTCACTTATCTCTTGAAGATAGTCAGAAGTGGTCTGGCATTCTGCTATCTTGGGTTT
TTGCAAAATTTTCTTCCACTGCTATGCGATCTACATCTATAAAAATTCTCTCATGCATTTTTGAAGAACATGGCCCATCTACCCTTCCAATTTCTCAAGG
CTGGTTAGCCATTTTGCTAAATGAAGTTTTAGTTTCGAGCAAGGTGTCCTTTGGTAAAGGAGGAACTCAGCCTAAAGCGGACAAAGTGAAGACTCAAATT
GATCAGTCCAACATTGCTTTTGCTACACAGACTGCTAATCAATTGGCAGGTGCTGCTGTGGATCAAGCAGGGAATCAGATAGGAACAGACATTGATTCTG
TTGATAGTTTCCCTCTGGCAGATCTTCTTTCCATGGATCCTTTTATTGGACCACTTAAGAACATGAAGAAAGACTCTGCACCTAAATTTAATGTGGAAGA
TTCTGCTTTGGCAACTCTTAAGGGGATCAAAGCACTGACAGAGCTCTGTTCCGAAGATTCTTTATGTCAAGACAAAATATATGAATTTGGGGTGTTATGT
TTGCTAAGGCGCTTTCTGTTGAGTGATGATTATGAGAAACTTGCTGTGATGGAAACTTATGATGCTTCTAGGGTCCCTGAGCCACAAGAACAAAGTGCTA
ATACTGCTGGTGAGTCGTCCAATGCAGATGGTAATGATCCATCTAGTGTTCGAGTTCCTCCGACAGCTCACATTCGAAAGCATGCGGCTAGGCTATTGAC
TACTCTTTCACTGATTTCAAAATTCCAAAAGGTTATTTTAGCAGATAAAGCCTGGTGTAAATGGCTAGAGGATTGTGCTTATGGGAGGATCGCAGGTTGT
CGTGACCTTAAAACACAGAGTTATGCTAGGGCAACTCTCTCAAATGTGCTGTGCAACCATTATACTGGTAATAGTGATGGTAGTGAGACTGAAGCTCGAA
ATAGAAAAGGTGATTGTGCTCGTTATGGTGACATGATCTTTTTGGTTAATCCAGATTTGCCACACTGGAAGCATTGTGAAAAAAATAGATGTTATGATGA
TTCAAAAAAATAA
AA sequence
>Potri.002G128201.1 pacid=42776742 polypeptide=Potri.002G128201.1.p locus=Potri.002G128201 ID=Potri.002G128201.1.v4.1 annot-version=v4.1
MTALMAPERSVRWHGSLVAQLLLEDRNLPLNDSVSDWSFSLLATISQASKNDDIPLAQMALSALLLSVERSPEARKIVIEKGLLLMRDTAKRTTNHKQVQ
EALAKALELLSTSDVHLSLEDSQKWSGILLSWVFAKFSSTAMRSTSIKILSCIFEEHGPSTLPISQGWLAILLNEVLVSSKVSFGKGGTQPKADKVKTQI
DQSNIAFATQTANQLAGAAVDQAGNQIGTDIDSVDSFPLADLLSMDPFIGPLKNMKKDSAPKFNVEDSALATLKGIKALTELCSEDSLCQDKIYEFGVLC
LLRRFLLSDDYEKLAVMETYDASRVPEPQEQSANTAGESSNADGNDPSSVRVPPTAHIRKHAARLLTTLSLISKFQKVILADKAWCKWLEDCAYGRIAGC
RDLKTQSYARATLSNVLCNHYTGNSDGSETEARNRKGDCARYGDMIFLVNPDLPHWKHCEKNRCYDDSKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G34310 alpha/beta-Hydrolases superfam... Potri.002G128201
[exp]
0 1
AT5G62600 MOS14 modifier of snc1-1, 14, ARM re... Potri.015G068600
[exp]
4.00 0.6843
AT5G41940 Ypt/Rab-GAP domain of gyp1p su... Potri.015G007400
[exp]
7.07 0.6168
AT2G26000 BRIZ2 BRAP2 RING ZnF UBP domain-cont... Potri.007G063900
[exp]
8.48 0.6759
AT3G62310 RNA helicase family protein (.... Potri.014G117900
[exp]
16.00 0.6627
AT1G07910 ATRNL, RNL, AtR... ARABIDOPSIS THALIANA RNA LIGAS... Potri.016G083100
[exp]
16.94 0.6320
AT1G19340 Methyltransferase MT-A70 famil... Potri.014G041400
[exp]
25.80 0.5883
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.001G160700
[exp]
28.98 0.6083
AT5G39940 FAD/NAD(P)-binding oxidoreduct... Potri.004G130000
[exp]
34.49 0.5893
AT5G04480 UDP-Glycosyltransferase superf... Potri.008G029400
[exp]
38.83 0.5678
AT1G55915 zinc ion binding (.1) Potri.010G249400
[exp]
40.24 0.5467

Potri.002G128201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.