Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42690 315 / 5e-102 Protein of unknown function, DUF547 (.1.2.3) AT4G37080 261 / 3e-80 Protein of unknown function, DUF547 (.1.2.3) AT2G39690 134 / 8e-35 Protein of unknown function, DUF547 (.1.2) AT3G12540 125 / 4e-31 Protein of unknown function, DUF547 (.1) AT5G60720 121 / 3e-29 Protein of unknown function, DUF547 (.1) AT1G16750 103 / 2e-23 Protein of unknown function, DUF547 (.1) AT3G13000 99 / 7e-22 Protein of unknown function, DUF547 (.1.2) AT5G47380 94 / 3e-20 Protein of unknown function, DUF547 (.1) AT5G66600 81 / 6e-16 Protein of unknown function, DUF547 (.1.2.3.4) AT2G23700 78 / 4e-15 Protein of unknown function, DUF547 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034800 [exp] 602 / 0 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3) Potri.007G041100 [exp] 329 / 2e-106 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3) Potri.009G009500 [exp] 136 / 2e-34 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.010G202900 [exp] 132 / 3e-33 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.007G003900 [exp] 96 / 8e-21 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.006G216800 [exp] 89 / 8e-19 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.005G136401 [exp] 79 / 3e-16 AT4G37080 115 / 6e-29 Protein of unknown function, DUF547 (.1.2.3) Potri.001G157200 [exp] 77 / 9e-15 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.002G001900 [exp] 77 / 1e-14 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032768 [exp] 388 / 4e-130 AT4G37080 495 / 3e-171 Protein of unknown function, DUF547 (.1.2.3) Lus10021756 [exp] 385 / 3e-127 AT4G37080 488 / 2e-166 Protein of unknown function, DUF547 (.1.2.3) Lus10021450 [exp] 135 / 9e-34 AT5G60720 541 / 0.0 Protein of unknown function, DUF547 (.1) Lus10016114 [exp] 105 / 2e-25 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1) Lus10027653 [exp] 105 / 8e-24 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 99 / 8e-22 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10034787 [exp] 99 / 1e-21 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10033328 [exp] 93 / 6e-20 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10016786 [exp] 84 / 8e-17 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10037293 [exp] 81 / 7e-16 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [poplar] [flax] DUF547 Protein of unknown function, DUF547 PF14389 [poplar] [flax] Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1
Representative CDS sequence Show only first row Show all	>Potri.002G128400.20 pacid=42778287 polypeptide=Potri.002G128400.20.p locus=Potri.002G128400 ID=Potri.002G128400.20.v4.1 annot-version=v4.1 ATGCAGGGGAGCAAACCAAATGTTGCCAAAAACAGACGAATCTCGAGCAGAGAGAGGAAAATAGCATTGCAACAAGATGTTGATAATCTAAAGAAGCAAC TTAGGCATGAAGAGAATATTCACAGAGCTTTGGAGAGAGCTTTCAGCAGACCGTTGGGAGCTCTCCCTCGCCTTCCTCCATATCTCCCTCGTGCGACGCT GGAGCTTCTTGCAGAAGTGGCTGTTTTGGAAGAGGAGGTGGTTCAGCTTGAAGAACAGATTGTCTATTTTAAGCAAGACTTGTACCAAGAAGCTGTCCAC ATTTCAAGCTCCAAAAGGAACATGGGAAGTTTTTCCGATTTATACAACTTGTACCGAATTAAGAATCCCAAGCCAGATCAGTTGAAGTCCTCAGCTCAAA ATCTGGACAAATCAGCCACTTCCATGATAAGCCATTTGCCATCCCTTTCCAATGGAACGGGGAAAGAGAATGCATTCTCTACTGCTAATTCTACGAAGAA CAACAAAGGATCCTCGATCCATAAAGCTCAGACAAGCAAAAATATGTTCAAAATACCTGCTGTCAACAATGGATCAGCAGAGAAGACATTAGATTCTCCC AAGTTACAGCTAGAACGCAGAGTAACAGGCCAAGAAAATGTGGAAGCAAGAACTGTTGTAACTCCAGGTGAAAGGCTATCAGGAGATGACAGCCCGAACA AGGTGTCTGAGGACATCATGAAATGCTTGTCAAGCATTTTCTTACGAATGAGCTCAGTGAAAAATAAGCCTACTGCAGATGATTTACCTTTCTCGTCAAC ATTAGTCCCTCAAGAAAATGGGAAAGAAATTGAATGTCGGGATCCTTATGGTATATGCTCAGAATTTGGAAACAGAGATATTGGGTCATATAAGCGTTTG TTTTCAATAGAACCTGGGGCGATTAATCCCAACCGAACATCAAATTCTTTGTTTCTACTTCACAGACTTGAACTTCTATTGGGGAAACTTGCCTCCGTCA ACTTGCAGAACCTCAGTCATCAGGAGAAACTTGCGTTCTGGATAAATATTTACAATTCCTGCATGATGAATGCATTTCTAGAACATGGAATCCCCGAGAG TCCTGAGATGGTTGTTGAACTAATGAGAAAGGCAACAATAAATATTGGAGGACACCTGCTAAATGCAATAACTATAGAACATTTCATCCTTAGACTGCCT TATTACTCAAAATACGTAAGCGGTGCCCATTACAACTTCCATGAAAGCTTTTTTAGAAAATTAAATACTTCCTCAGCATGCCATTTACTCCTGAGTTTTG ATCAGACAATTTCAAAAGGCGCAAAAAATGATGAAATGGCAGCGAGGAACAAATTTGGATTGGAGTTATCTGAACCACTGGTATCATTTGCCCTTCGCTG TGGAAGCTGGTCCTCCCCTGCTCTGCACTGA
AA sequence Show only first row Show all	>Potri.002G128400.20 pacid=42778287 polypeptide=Potri.002G128400.20.p locus=Potri.002G128400 ID=Potri.002G128400.20.v4.1 annot-version=v4.1 MQGSKPNVAKNRRISSRERKIALQQDVDNLKKQLRHEENIHRALERAFSRPLGALPRLPPYLPRATLELLAEVAVLEEEVVQLEEQIVYFKQDLYQEAVH ISSSKRNMGSFSDLYNLYRIKNPKPDQLKSSAQNLDKSATSMISHLPSLSNGTGKENAFSTANSTKNNKGSSIHKAQTSKNMFKIPAVNNGSAEKTLDSP KLQLERRVTGQENVEARTVVTPGERLSGDDSPNKVSEDIMKCLSSIFLRMSSVKNKPTADDLPFSSTLVPQENGKEIECRDPYGICSEFGNRDIGSYKRL FSIEPGAINPNRTSNSLFLLHRLELLLGKLASVNLQNLSHQEKLAFWINIYNSCMMNAFLEHGIPESPEMVVELMRKATINIGGHLLNAITIEHFILRLP YYSKYVSGAHYNFHESFFRKLNTSSACHLLLSFDQTISKGAKNDEMAARNKFGLELSEPLVSFALRCGSWSSPALH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42690			Protein of unknown function, D...		Potri.002G128400 [exp]	0	1
AT5G53588		CPuORF50	conserved peptide upstream ope...		Potri.015G006850 [exp]	1.73	0.7586
					Potri.011G149950 [exp]	5.65	0.7681
AT1G51830			Leucine-rich repeat protein ki...		Potri.018G107901 [exp]	8.48	0.6808
AT5G62065			Bifunctional inhibitor/lipid-t...		Potri.015G142100 [exp]	12.48	0.7285
					Potri.004G061100 [exp]	17.74	0.6724
AT5G66815			unknown protein		Potri.014G034500 [exp]	25.25	0.6535
AT4G29035			Plant self-incompatibility pro...		Potri.016G066900 [exp]	26.11	0.6150
					Potri.003G056450 [exp]	27.65	0.6409
					Potri.019G005913 [exp]	41.13	0.6406
					Potri.003G056850 [exp]	44.49	0.6010

Compare expression of checked genes

Potri.002G128400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.