Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36210 1049 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT4G14570 91 / 1e-18 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) AT1G20380 45 / 0.0002 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160400 [exp] 88 / 8e-18 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Potri.005G247300 [exp] 46 / 9e-05 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.007G035900 [exp] 45 / 0.0002 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.002G013900 [exp] 43 / 0.0008 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021758 [exp] 1039 / 0 AT5G36210 949 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10032765 [exp] 628 / 0 AT5G36210 606 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039405 [exp] 96 / 4e-20 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10015363 [exp] 70 / 5e-12 AT4G14570 871 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10021235 [exp] 46 / 9e-05 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10004631 [exp] 45 / 0.0002 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 45 / 0.0003 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01738 [poplar] [flax] DLH Dienelactone hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.002G128700.6 pacid=42777754 polypeptide=Potri.002G128700.6.p locus=Potri.002G128700 ID=Potri.002G128700.6.v4.1 annot-version=v4.1 ATGGGTTTGACATACGCTAGTCAATGGTTTTCTCAGCTGTCGTCACTCACTCTTACTCGCTTATCTTCTTCATCTTCTCACTCTTTCAGCCTCTTCAACA GAAACTACACACAAAGGAAAGTCATCACTAACTTCTCTCCTAAAAGACAGCTACAGCGGCCTACTTTCAAAACCATGGCTTCTTCAACACAAGTAGCTGA TGCAACAGCCAAACAAGACAAAATCACTGCCCCTTACGGCTCATGGAAGTCCCCAATCACCGCAGACGTCGTCTCTGGCGCTTCCAAACGACTCGGCGGA ATCGCCGTTGACGACCACGGTCACCTCTTCTGGGTCGAATCCCGCCCCTCTGAATCTGGGCGAGCGGTTCTTGTGAGAGAAGCCGACAAACCGGGAGAAG AACCCACCGATATTACACCGAAAGAATTTGCTGTGAGAACAACGGCTCAAGAGTATGGTGGCGGCGCATTCACGATATCAGCAGATACTGTCATTTACTC TAATTACAAGGATCAGCGGCTTTACAAGCAGTCTATCAAATCCAAAGTAGATTCTTCTCCTGTGCCGCTTACACCGGACTATGGCGGTCCCGTGGTTTCT TATGCTGACGGGGTCTTTGATTTGCGCTTCAATCGTTTTGTTACTGTGATGGAAGATCGTCGCGTCAGTAGTACAAATTCAACCACAACAATTGTTGCTG TAGGCCTTAGTGACAAGAGTATCCAAGAGCCAAAAGTATTAGTAAGTGGCAATGATTTCTATGCATTCCCACGCATAGACCCCAAAGGCGAACGGATAGC GTGGATAGAATGGGGCCACCCTAATATGCCATGGGATAAAACAGAGCTCTGGGTCGGCTATATTTCTGAAAATGGAGATGTTCACAATCGCATTTGTGTT GCTGGTTGTGATCCTACCCTTGTGGAGTCTCCAACTGAGCCCAAGTGGTCCTCCAAAGGTGAACTATTTTTCATCACTGATAGAAAAAGTGGATTTTGGA ATCTATATAAATGGATTGAATCTGTCAATGAGGTGCAAGCAATTTATTCCCTGGATGCTGAGTTCTCGACGCCATTGTGGATTTTTGGCATCAATTCCTA TGAGCTTATTCAGAACAATGAAGGAAAGAACTTAATAGCTTGCTCTTACAGGCAGAATGGAAGATCATTTCTTGGTATTCTGGATGATGTTCAAAGCTCA TTATCTCTACTTGATATTCCTTTCACGGACATCAATCATATGACTTCATGGAACCGTTGCTTATATGTTGAGGGAGCATCTGCAATTCATCCATCATCAG TGGCTAAGGTGAACTTAGATGACTATGGATCCAAAGTTGTTGATTTCAAGATTATTTGGTCATCTTCACCTGATAGTTTGAAGTACAAGTCATACTTCAG CTTGCCTGAGTTAATTGAATTCCCAACAGAAGTTCCTGGTCAAAATGCCTATGCATATTTTTATCCACCTTCAAATCCCATTTACCAAGCTAGTCAAGAA GAAAAGCCTCCATTATTGTTGAAAAGCCATGGAGGGCCTACAAGCGAGACACGTGGAATCTTAAACTTGAGCATCCAGTACTGGACCAGTCGTGGTTGGG CATTTGTGGACGTGAATTACGGTGGAAGCACTGGTTATGGTAGAGAATATAGAGAACGCTTGTTGAATAAATGGGGAATTGTGGATGTCAATGACTGTTG CAGTTGTGGTAAATTTTTGGTGGACAATGGAAAGGTAGACAGTGAACGGCTATGTATAACTGGAGGTTCTGCTGGTGGCTATACAACCTTAGCTGCTCTT GCTTTTAAAGAAACATTTAAAGCTGGAGCTTCCTTATATGGTGTGGCTGACTTGAGCATGTTGAGAGCAGAAACTCACAAATTTGAGTCTCATTACATTG ATAATCTTGTTGGTACTGAAGAGGATTACTTTGAGAGGTCTCCTATCAATTTTGTTGATAGGTTTTCTTGCCCCATCATTCTATTCCAAGGATTGGAAGA CAAGGTTGTGCCCCCTGATCAGGCTCGTAAAATCTACCTGGCATTGAAGAAAAAAGGTTTGCCAGTAGCTCTTGTGGAGTATGAAGGAGAGCAGCATGGT TTCCGGAAGGCCGAGAACATTAAGTTTACACTGGAACAACAGATGCTGTTTTTTGCCCGCTTGGTTGGACGCTTTACCGTGGCAGATGAGATTGATCCAA TTAGGATTGATAACCTTGACTAA
AA sequence Show only first row Show all	>Potri.002G128700.6 pacid=42777754 polypeptide=Potri.002G128700.6.p locus=Potri.002G128700 ID=Potri.002G128700.6.v4.1 annot-version=v4.1 MGLTYASQWFSQLSSLTLTRLSSSSSHSFSLFNRNYTQRKVITNFSPKRQLQRPTFKTMASSTQVADATAKQDKITAPYGSWKSPITADVVSGASKRLGG IAVDDHGHLFWVESRPSESGRAVLVREADKPGEEPTDITPKEFAVRTTAQEYGGGAFTISADTVIYSNYKDQRLYKQSIKSKVDSSPVPLTPDYGGPVVS YADGVFDLRFNRFVTVMEDRRVSSTNSTTTIVAVGLSDKSIQEPKVLVSGNDFYAFPRIDPKGERIAWIEWGHPNMPWDKTELWVGYISENGDVHNRICV AGCDPTLVESPTEPKWSSKGELFFITDRKSGFWNLYKWIESVNEVQAIYSLDAEFSTPLWIFGINSYELIQNNEGKNLIACSYRQNGRSFLGILDDVQSS LSLLDIPFTDINHMTSWNRCLYVEGASAIHPSSVAKVNLDDYGSKVVDFKIIWSSSPDSLKYKSYFSLPELIEFPTEVPGQNAYAYFYPPSNPIYQASQE EKPPLLLKSHGGPTSETRGILNLSIQYWTSRGWAFVDVNYGGSTGYGREYRERLLNKWGIVDVNDCCSCGKFLVDNGKVDSERLCITGGSAGGYTTLAAL AFKETFKAGASLYGVADLSMLRAETHKFESHYIDNLVGTEEDYFERSPINFVDRFSCPIILFQGLEDKVVPPDQARKIYLALKKKGLPVALVEYEGEQHG FRKAENIKFTLEQQMLFFARLVGRFTVADEIDPIRIDNLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36210			alpha/beta-Hydrolases superfam...		Potri.002G128700 [exp]	0	1
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.011G145450 [exp]	1.73	0.9206
AT5G03650		SBE2.2	starch branching enzyme 2.2 (....		Potri.006G115100 [exp]	2.00	0.9206
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	3.46	0.9150
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Potri.001G256100 [exp]	4.47	0.9228
AT1G32690			unknown protein		Potri.001G141600 [exp]	5.00	0.9056
AT2G30500			Kinase interacting (KIP1-like)...		Potri.019G131000 [exp]	12.24	0.8753
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	13.96	0.8645
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048200 [exp]	14.28	0.8555
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.005G203000 [exp]	18.33	0.8813
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Potri.015G136700 [exp]	20.34	0.9013	Pt-NAP8.1

Compare expression of checked genes

Potri.002G128700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.