Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09680 730 / 0 ATCTC1 conserved telomere maintenance component 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032880 [exp] 1072 / 0 AT4G09680 621 / 0.0 conserved telomere maintenance component 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0586 [poplar] [flax] CTC1 PF15491 [poplar] [flax] CTC1_2 CST, telomere maintenance, complex subunit CTC1
Representative CDS sequence Show only first row Show all	>Potri.002G129000.1 pacid=42777208 polypeptide=Potri.002G129000.1.p locus=Potri.002G129000 ID=Potri.002G129000.1.v4.1 annot-version=v4.1 ATGGAAGAAACAGCTGCAGTACTCACAGTCAAAGAGCTAGTTCTCCGTGCTCAGCCACTCACCGCTACATCTTCCCTCAAATCCAAACTCAACTCAACAA ACCAAAAACCCCAATCTCAATCACCACCACCTTCCACAAACCCTAACCCTAAAATTCTTACTCCCTTGAACCACTCAGTGATCTTACTCGGAACCTTAAC TCTCCCAACCGAAACCCTAAAATGTCCAATCAGGAATTGCTTTCGATTCTCCGATGATTCATCCACAATCTGCTGTGATATTCTCGATTTCCGTGTCAAT ATAATCGGGAAGAAGATTCGAGTTCTCGCTTGGAATTTCATTCCTTTGAGACAATTCTGTGGCGGCGGCTTCTTAGAGATTATCAAATGGAGTTTTGTAG ATTCAACCAGTAGTGTAATATCTCGCAGTTCGAGTTCCTTAGATTTATTTCCATTAGTTTCAGGCTCGCCTTCTAATGAAGAAGATCAATCCAAGGCACG TTATAGCGTTAACGGTCCAATTGAATCGATAAGTCCTGTTTTTATTGTTCCTTGTTCAATTGGTGATGGTAAATCACAAAATCTTCGAGGGTTTGTTGCG CGAATTATGGTTTGTCAGTGTAAAACATGTAATTCTCCAGAATCAATTAAGTTTTCGCATAGCGTAGATCAAGGAAACGATTCTCATTCTTTTACAAAAC CTTCCTTTGTGTATTTTTGTGGTGCTTCGTGGTGTTGGCATCCTGTGATTACGAAGCTTGTAGGGATTGTGATTATGCTATCTGGGCTGAAAAAGAAGTT AGTTTTTATAGGAAAAGAGGAGTCTCAATTGATGTTTGTGACTACTGAATATTCTGTTTTGCAATTGCCAAAAGTGTTGAAGAAATGGCCACCGCTCTCG AGAAATGTTATCCGAGGGAATGGGGAATGTGGTGTTTATACCGGAGTTGTTAGAGGTGTGTATATGCAAGGGATGGTTGTTGAATTGGACAAGGAAGTGT GGCTTTTATTAACGGATCAGCTAGTTACGGCACCACATAGTCTTAGAGAGGGTGCGATTATAACAGCGAGGAATGTCCATTTTGTGAATCCAAAATTTTC TTGGACAAAAATGCTCGTACTTGGGGCTTGCTTCAAAACTAGCATTACTGTGGAATCGTTCTCCCCAATGGAAACTGGATGCCATATGGTGGCCCAGTCA CAGAGTCAGCTGGGGAAGTTCATTGAGTCCTTGACATTTTCTGCCAGACTATGGACACTGCTTGTTATTTCATGCTTTCGGAAGAAGTTTGCTGGGATTT TATCTGAAAAGGAGATTCTGGGATCAAAACATAAGGAAGGGCTAGCTCAGATGTTTGCTAGATCACATTTACCTGAATCAATTTTTCGAGCTCGGCTTGG AGTACTGACAGAATTATGCAGGCATGAATCATGTGGCTGTGGTAGTGAGCCATATCATGGTAACCTGAAATTGGTGGCACCTATCTCTATTTTGCTCAGT CATTGTGATAACATGTGGATGAGGACAGTATCAAAGGACTGTCATACTTCACAGGAAAAATCTCGCTTTAACTTACTGTCACATGAAAGGACATCTTATT GTTTGCCATTGAGGAGGAATTTTTCGAGCGAAGATATAGGCATTCTTTTGCTTGGAAGTCTGAAGATCTCTCCATCTTCTGGAAGGTTGCAGTTAGTTGA TGCGACTGGAAGCATCGATGTTCTGGTACCCGACCTTCCATCCACTTGGAAGACCAACAACATCTATGAGGTTGTTGACTATAGTCTCATTATGGAAGGC ATGCCTAAAGTTGTGGATCATTTGGGGTTGCTCAACAATGAGTCTCTCTCATGCAGCCATATCTTTCATTATGTGCCACGGGCAACAGAGATGAACTTGG CAATCTATTCCTATTTTCACTTAAGCCGTGCAACCTGCAAAAATCTTTGCTTTTATCCTTCTGTGCCCTTTAATGAAGATCTTCAGGAACTTCAAAGTGG AAGATTTCACTTGATTTGGATCTCACACAAATATCCTTTGCTACATCAGTTACAAGGTGATCCAGTGATACCAAACAGGGCCAATGTGTTTGTTGAGGCC GTTGCCCTGCCTTGGGACCTGTCTATTGCAGGCATGGATCCAATTGCACATTCTGGTGAGATTTCAAGGATTTGGCTGAACAAACCCTTGAGACATTACA TTGGCGAAAACAACGAAGAATATTTACCCAATAAGAAGTGTAAGATGGATTGCATGCCCAGCCAGGATTTTGTTTCAGTTTTGGTTGATGATCAGAGCTA TGTTGGCAGTGAGCTGAGCGCTTGCTCTGGTTCTCTTAGGGAATCAACTAAGTGGAAATGTGGAGAACTGAGCTGTCCTGAAATTCCATGTTTGGCCATT GCTAGAAATGCCAACAGTCACAACTTGGTTAGTTCAGGGAAGTTGTGCTGCACAAATTGCAAGGTAAAGATTGGTGCTGATTATAAACCAAGTGGCAGGA AGATATTGCTGGAGTTCAGTTCTGACAGTTTATTCAGGTATCAGATGCTTCAGATTGGGGGTTACTATGTAATAAAGCACCGTAAAGAAGAATCTTTTTG CTGTCTTAAGGACTACAACAATACTGGTGGTGGTAAAATTTGCGTCTCTTCCAGAATATGTCTGTGGAGCCTTTCATTCTCATCTGATGATGTTACAAAT GATAAATCATTAGATGATGCTCTTCCTGGTGATTCTTCTCTAAGCAATGAAGAGGTTCTGATGAAAAATCAAGTTGAGCTACTTCTCAGGAGGTCTACTG GAAACTCTCCAGAATGCTCAGATGTCCAGCTTCATCTCTCTGCTGATGTAATGCATCTTTTGGTACTGAAGCTTAACAAAATGAAAGAAGGCTTCATGCC AGTTGTGATGCCAGAAGAGGCTTTCAATGGATCTCCTCACTTTATGACCAAAATGTCTGCATCTAGTACGCCCTTCGCATCTTCCAATTCCTGTTGTGTT TTTCCTGAAGGAAATTTAATATCTGTGCTTGGCAATGTTGTCGCCTTTCATTTTTTAAACTCCAATTTGGCCAATGCTCATTCAAGCTGTGAAACCGTGA GTGACATTCCTCATATGGGATGCTTTCAGGGGATTCCAAGCAGTTGTTGTGTTCATGTTTTAGTAGACAAGCAAATGGTGAGAATTTTTGGTTCTTTGAG CAAACATGCATATGCTGTTGGATTTGGAGCTGGTGTAAATGCCACATTTCATCGAGTTCTTAAATTGAGGGGAACAAATAGATTGATGCTGACTCCTGCT TCATTTATAGTGATCAATTCCATAAGGGTTGCAAATGAAGCGTCCCAGGAAAATTCTTCTGATTTGTGGTTATACAGATCATCAGCTGCCTCTTCGGACA AAGTTTCGTTTGTTATGATTTCAGAATTGAATCAACGCGCAGAGAGCAAGCCTGTGAAGTTCTATTGCAGGGTTGTTGCTGTTCATGTCCTGGTTCTGGA GAACAGAAAATATTTGGCATCAAAAGTTCACTCCATGCAACATTTTCTTGACATTCCACTTGCTTCTTTTGTGCTGGATGATGGATCATCATCATGTTAT TGCTGGGCTAATGCTGAAAGAGCAGCAACTTTGTTAAGGCTGCATGAAGAACTTCCGATGAGAGCTTTTGAAAGCAGTGGCTGCACATTAAAGTGGGTAG GGATTACCAAGAGTTCCTGGAAAACCACTATGTATCATCTTGAAAAGATGTTAAAGAAGCATCACAGGATTGTCGTGAAAAACCATGGGTCAATGGTAGA TTCTTCATATCAAGATCTTAATGTTTCTGTCAGTTCAGATGGTGACCTCAGCAGCTCAGATGACAACCTTCTGAAATTCATAATCTTCCATGCTTGCTTT GGAACATTTTGGACTGTTACAGCCAGTGCGATGGAGATGAATGCTGTTAATCAGTTGGAAAAGGAGCACCTTATGCAAATGGAGATGGCCCCGCATCCCA TGCAGAATGTATGGGCTAAGGAAGTTTGTTACACGGATACTCGTACCGAGGCCTGGAACATGGTTCAAGAACAGCTAAGAAGGTAA
AA sequence Show only first row Show all	>Potri.002G129000.1 pacid=42777208 polypeptide=Potri.002G129000.1.p locus=Potri.002G129000 ID=Potri.002G129000.1.v4.1 annot-version=v4.1 MEETAAVLTVKELVLRAQPLTATSSLKSKLNSTNQKPQSQSPPPSTNPNPKILTPLNHSVILLGTLTLPTETLKCPIRNCFRFSDDSSTICCDILDFRVN IIGKKIRVLAWNFIPLRQFCGGGFLEIIKWSFVDSTSSVISRSSSSLDLFPLVSGSPSNEEDQSKARYSVNGPIESISPVFIVPCSIGDGKSQNLRGFVA RIMVCQCKTCNSPESIKFSHSVDQGNDSHSFTKPSFVYFCGASWCWHPVITKLVGIVIMLSGLKKKLVFIGKEESQLMFVTTEYSVLQLPKVLKKWPPLS RNVIRGNGECGVYTGVVRGVYMQGMVVELDKEVWLLLTDQLVTAPHSLREGAIITARNVHFVNPKFSWTKMLVLGACFKTSITVESFSPMETGCHMVAQS QSQLGKFIESLTFSARLWTLLVISCFRKKFAGILSEKEILGSKHKEGLAQMFARSHLPESIFRARLGVLTELCRHESCGCGSEPYHGNLKLVAPISILLS HCDNMWMRTVSKDCHTSQEKSRFNLLSHERTSYCLPLRRNFSSEDIGILLLGSLKISPSSGRLQLVDATGSIDVLVPDLPSTWKTNNIYEVVDYSLIMEG MPKVVDHLGLLNNESLSCSHIFHYVPRATEMNLAIYSYFHLSRATCKNLCFYPSVPFNEDLQELQSGRFHLIWISHKYPLLHQLQGDPVIPNRANVFVEA VALPWDLSIAGMDPIAHSGEISRIWLNKPLRHYIGENNEEYLPNKKCKMDCMPSQDFVSVLVDDQSYVGSELSACSGSLRESTKWKCGELSCPEIPCLAI ARNANSHNLVSSGKLCCTNCKVKIGADYKPSGRKILLEFSSDSLFRYQMLQIGGYYVIKHRKEESFCCLKDYNNTGGGKICVSSRICLWSLSFSSDDVTN DKSLDDALPGDSSLSNEEVLMKNQVELLLRRSTGNSPECSDVQLHLSADVMHLLVLKLNKMKEGFMPVVMPEEAFNGSPHFMTKMSASSTPFASSNSCCV FPEGNLISVLGNVVAFHFLNSNLANAHSSCETVSDIPHMGCFQGIPSSCCVHVLVDKQMVRIFGSLSKHAYAVGFGAGVNATFHRVLKLRGTNRLMLTPA SFIVINSIRVANEASQENSSDLWLYRSSAASSDKVSFVMISELNQRAESKPVKFYCRVVAVHVLVLENRKYLASKVHSMQHFLDIPLASFVLDDGSSSCY CWANAERAATLLRLHEELPMRAFESSGCTLKWVGITKSSWKTTMYHLEKMLKKHHRIVVKNHGSMVDSSYQDLNVSVSSDGDLSSSDDNLLKFIIFHACF GTFWTVTASAMEMNAVNQLEKEHLMQMEMAPHPMQNVWAKEVCYTDTRTEAWNMVQEQLRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09680		ATCTC1	conserved telomere maintenance...		Potri.002G129000 [exp]	0	1
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Potri.010G215200 [exp]	3.00	0.8236
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Potri.003G194000 [exp]	3.46	0.8148
AT3G32940			RNA-binding KH domain-containi...		Potri.001G008700 [exp]	3.74	0.8678
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	7.54	0.8364
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.005G113400 [exp]	8.00	0.7915
AT5G53620			unknown protein		Potri.015G006700 [exp]	9.48	0.8235
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.005G237500 [exp]	12.96	0.8239	Pt-XRN2.2
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	22.58	0.8298
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Potri.018G139800 [exp]	23.76	0.7221	Pt-ACA8.6
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Potri.009G002100 [exp]	24.26	0.7802

Compare expression of checked genes

Potri.002G129000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.