Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66850 439 / 4e-144 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G63700 315 / 5e-95 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 306 / 2e-94 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G09000 229 / 2e-65 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT3G06030 228 / 6e-65 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08500 224 / 4e-64 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT1G54960 222 / 3e-63 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT4G08470 219 / 2e-62 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT3G13530 219 / 8e-60 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 219 / 1e-59 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G035500 [exp] 1038 / 0 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 466 / 1e-154 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.007G039800 [exp] 457 / 6e-152 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.015G146700 [exp] 324 / 2e-98 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 322 / 3e-97 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 315 / 6e-95 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 314 / 1e-94 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G106800 [exp] 300 / 6e-92 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G062500 [exp] 299 / 1e-91 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021766 [exp] 489 / 8e-162 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 434 / 3e-142 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10019635 [exp] 433 / 4e-142 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10022461 [exp] 418 / 1e-130 AT5G66810 756 / 0.0 unknown protein Lus10016768 [exp] 389 / 4e-127 AT5G66850 460 / 3e-155 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10032761 [exp] 334 / 3e-104 AT5G66850 303 / 8e-93 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10014976 [exp] 324 / 4e-99 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 317 / 1e-95 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 316 / 2e-95 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 311 / 1e-93 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G129100.1 pacid=42779170 polypeptide=Potri.002G129100.1.p locus=Potri.002G129100 ID=Potri.002G129100.1.v4.1 annot-version=v4.1 ATGCATTTCTTTTCAAAAACTTGTTCCTCCTCTTCTTCAATGCCATCATACCCCTCTGTTTCTTCCCCAAAGGATGACAGCAACAACTTCCATGGCACTG CTGGTAATTCCTGGAATACCCGTGGCCAGTCTTTTATGCAGAAGAAGCTTGAGCGGCAGAGGAAGCTTAGGCATGTCAGTGATCAGGAGCTTGGCTTGAA TCTTAATCTCACGGACCGACCAAGTTCTCCGCCTGCTGACCCTGATTCCGCCAAAAAGTCGTGGTCTCCGGGCGGGGCGGACCACTGGTCTTCGGTGGCC GTCCCGCATCCATTGCCAGTACCTGAATCGCTTTTGACTAGGAAACGGGAGTCGTTGGGTTCGGTTTTGACCCAGGGTCATCCCGGATCATCGGAAGAAG GCCCGGGCCATGTGTTAGGGAGGAATAGCACTGATCACATTGCTATAAAGTCTGCCAAACCTTCAAGCAATTTTCGTCAGAGGTTCTCTTGGCACGCAAA TGTTGAAAGCACTAATCTTGACATAAGACTGAAAATCCCCGCCAGAAGTGCCCCAACAAGTGGTTTCTCAAGTCCTTCTGCCAGTCCACCAAGATTGAAT GCCAGGGATCTTTTTGCTTCTCGTGTTGCCACTGAGTCGACTAAATCTTCAGGCGATTCTAATAGGGTACTGTCAAATGATGTAAACGTTGAAGGTGCTA AATACAAGTTCAGGGGGGTTACTTCTCCTAGAAGTGCCCCGACAAGTGGACTCCCAAGTCCTGCGACTGTTAGCCCACAAAGATCATACACCGGAGACTT TTTACCTACTTTAGTGGCTCGTCGAGAAAACCAGGTTCAGTCAACTTTGGAGATTCCAGACTTCGGTAGGCTTGCAAGCCATTCTTCACAAGTGCCACCA GTTAAAACTGTTTTTAGTCCCGAACGTTCTCCATTTCATAGCCCAACATTGCAAAGTTCCTACCTTAACCCCAAAAATATTTTTTCATTTCTATCAAATC ATAAATTGTTTCAGGGAAGTTCCAATGAGTGGCCTGAAAGCAGTCATGCAAGTGCTCATCCGTTGCCTCTTCCTCCTAAAGCTGCACCACTACAATTTTC CATTCCGTCCCCGCCGACTGTCATCCATAACACCTTAGAAAAACTAAATGTACCTTTCAATAAAAATCAATGGGTGAAAGGAAAACTTATTGGATCTGGT ACATACGGAAGAGTTTATATTGGAACCAACAGAGTGACTGGAGCCTCATGTGCAATGAAGGAAGTTAATATCATCCCTGACGATCCAAAATCTGCCGAAT GTATAAAACAGTTGGAGCAGGAGATTAGAATTCTCCGTGATCTAAAGCATCCAAATATAGTGCAATATTATGGCAGTGAGATCGTTGATGATCATTTTTA CATATATTTGGAGTATATTAATCCTGGATCGATCAATAAGTATGTCCATGAACACTGTGGACACATGACAGAATCCATAGTCCGCAATTTCACCCGCCAT ATTCTCTCTGGGCTGGCTTGTTTGCACAGTACAAAGACGGTCCACAGGGACATTAAAGGTGCAAATTTGCTTGTTGATGCATCAGGTGTTGTTAAGCTCA CAGATTTTGGGATGGCAAAACATCTCTCAGGACTATCATATGAATTGTCCTTAAAGGGCACTCCACACTGGATGGCTCCAGAGGTCATAAAAGCTGTGAT GATGCAAAATTGCAACCCGGAACTTGCTTTGGCTGTTGATATATGGAGTCTGGGTTGCGCAATCATTGAGATGTTTACTGGCAAACCTCCATGGGGTGAC CTTCAGGGGGCTCAAGCTATGTTCAAGATTTTGCATAAAGATCCACCTATGCCAGAAACCTTGTCACCAGAGGGAAAAGATTTCCTCCGCCGTTGCTTTC GAAGAAATCCAGCAGAGCGTCCCTCGGCCATGACGCTACTTGAGCATCCTTTCGTGTGCAGATCAGGTGATCTTAATGTGTCGGCAGGCACAGAAGCAGC ACCTGCAGTGAACCTCACGGATAATTCACAGAATTTGAGAGATCGCACCGCAGAAAATGACGTGCTGCAAACCTCCCCAGGCATGCGGATGAGGAACCAT CAACTGCCAAGAACGAGACCAGTCAATAAAGCCAAGTGTACACGTTCAGCTGGGCTTCAACTTCTCAGCACCCACCTTGTTCAGCACTCGAGGCCCGCCC TTACATATCTACAGCACAGCTAG
AA sequence Show only first row Show all	>Potri.002G129100.1 pacid=42779170 polypeptide=Potri.002G129100.1.p locus=Potri.002G129100 ID=Potri.002G129100.1.v4.1 annot-version=v4.1 MHFFSKTCSSSSSMPSYPSVSSPKDDSNNFHGTAGNSWNTRGQSFMQKKLERQRKLRHVSDQELGLNLNLTDRPSSPPADPDSAKKSWSPGGADHWSSVA VPHPLPVPESLLTRKRESLGSVLTQGHPGSSEEGPGHVLGRNSTDHIAIKSAKPSSNFRQRFSWHANVESTNLDIRLKIPARSAPTSGFSSPSASPPRLN ARDLFASRVATESTKSSGDSNRVLSNDVNVEGAKYKFRGVTSPRSAPTSGLPSPATVSPQRSYTGDFLPTLVARRENQVQSTLEIPDFGRLASHSSQVPP VKTVFSPERSPFHSPTLQSSYLNPKNIFSFLSNHKLFQGSSNEWPESSHASAHPLPLPPKAAPLQFSIPSPPTVIHNTLEKLNVPFNKNQWVKGKLIGSG TYGRVYIGTNRVTGASCAMKEVNIIPDDPKSAECIKQLEQEIRILRDLKHPNIVQYYGSEIVDDHFYIYLEYINPGSINKYVHEHCGHMTESIVRNFTRH ILSGLACLHSTKTVHRDIKGANLLVDASGVVKLTDFGMAKHLSGLSYELSLKGTPHWMAPEVIKAVMMQNCNPELALAVDIWSLGCAIIEMFTGKPPWGD LQGAQAMFKILHKDPPMPETLSPEGKDFLRRCFRRNPAERPSAMTLLEHPFVCRSGDLNVSAGTEAAPAVNLTDNSQNLRDRTAENDVLQTSPGMRMRNH QLPRTRPVNKAKCTRSAGLQLLSTHLVQHSRPALTYLQHS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.002G129100 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025566 [exp]	2.00	0.9251
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.004G206100 [exp]	2.82	0.9225
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385900 [exp]	5.00	0.8936
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385400 [exp]	6.92	0.8945
AT1G34750			Protein phosphatase 2C family ...		Potri.005G164600 [exp]	8.48	0.8927
AT1G06870		Plsp2A	plastidic type I signal peptid...		Potri.014G036400 [exp]	9.48	0.8802
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.006G105300 [exp]	9.89	0.8880
AT1G07650			Leucine-rich repeat transmembr...		Potri.019G009601 [exp]	10.19	0.8552
AT3G14840			Leucine-rich repeat transmembr...		Potri.019G009700 [exp]	12.24	0.8516
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.015G055000 [exp]	14.49	0.8728

Compare expression of checked genes

Potri.002G129100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.