Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47720 84 / 2e-19 OSB1 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G035600 [exp] 196 / 3e-61 AT1G47720 158 / 6e-46 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.002G045100 [exp] 47 / 4e-06 AT1G47720 112 / 2e-29 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.005G218100 [exp] 47 / 6e-06 AT1G47720 114 / 6e-30 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032760 [exp] 70 / 5e-14 AT1G47720 74 / 2e-15 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10021767 [exp] 67 / 9e-13 AT1G47720 124 / 1e-31 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10018763 [exp] 48 / 2e-06 AT1G47720 109 / 3e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10024852 [exp] 47 / 4e-06 AT1G47720 110 / 2e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10014728 [exp] 42 / 0.0003 AT1G47720 106 / 3e-27 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G129166.2 pacid=42779492 polypeptide=Potri.002G129166.2.p locus=Potri.002G129166 ID=Potri.002G129166.2.v4.1 annot-version=v4.1 ATGATTAATCCGTGCCGTATCGGATTCTTAATAGGAACCTGTCCCCCTAGTTTCTCGAATTTCTCTACAGATGAAGACGAATTCGAAGAAACCGATGGCA GCGCAGTTTATGGACACACTCTCTTAATCCAGCGGCCTTCTACCGTAGAATGGACACCGAATTTGGTTAGTTTGGTTAGTTTTATCAGTACTGTGGATTG GTACCCGATAATTCTCAGAAATATGGGCGGTGACTTTGTCTGTTACACTCTTCTCTATGCAAGAAATCCACATGATTCAAATCGCTGGTTCAGGATTCAA GTGGAGACGTGGGACGATATGGCGAAATTGTGCTTTCAACATCTAAAGCCAAATGATCACACATATGTCTCGGGCCATTTGGAGTCTTACTTCAAGGTTT CTAGCAAAGGAAATCCAAAGTCCAGTTATAAGGAGGAATCAGAGTTGAAGCCTGTCGAAACCCTCCCTGAGGAATCAGAGTCAGGGACATGCCAAAAATT TAAGGAACCAGAATCAGGTGCCTGCCAAAAATCCATGGAGCCACATTCAGGAGGTGCCTGTCGCTTACAATCTTGGAATCTATTATTAGCTCATCATAAA GTTGCCAGATATGACTGCCTGGGTGTGTGGGGATCAAGAATGCTGATTACTGGCAGGCAAAGAAAGTCATACTGTTTGATTGGGCCATGGTTTTTTATAT GA
AA sequence Show only first row Show all	>Potri.002G129166.2 pacid=42779492 polypeptide=Potri.002G129166.2.p locus=Potri.002G129166 ID=Potri.002G129166.2.v4.1 annot-version=v4.1 MINPCRIGFLIGTCPPSFSNFSTDEDEFEETDGSAVYGHTLLIQRPSTVEWTPNLVSLVSFISTVDWYPIILRNMGGDFVCYTLLYARNPHDSNRWFRIQ VETWDDMAKLCFQHLKPNDHTYVSGHLESYFKVSSKGNPKSSYKEESELKPVETLPEESESGTCQKFKEPESGACQKSMEPHSGGACRLQSWNLLLAHHK VARYDCLGVWGSRMLITGRQRKSYCLIGPWFFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Potri.002G129166 [exp]	0	1
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Potri.001G031700 [exp]	1.73	0.8224
AT1G80880			Tetratricopeptide repeat (TPR)...		Potri.001G043500 [exp]	7.74	0.8194
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.016G050500 [exp]	10.39	0.7729
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	15.00	0.8175
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Potri.014G095500 [exp]	15.16	0.7627
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Potri.013G068300 [exp]	17.43	0.7661	ZIGA4.1
AT4G39420			unknown protein		Potri.007G078650 [exp]	21.72	0.8009
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.001G271200 [exp]	23.23	0.7894
AT3G12670		EMB2742	embryo defective 2742, CTP syn...		Potri.008G080100 [exp]	23.91	0.7414
AT3G10650		AtNUP1	unknown protein		Potri.008G014800 [exp]	25.88	0.7991

Compare expression of checked genes

Potri.002G129166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.