Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27040 456 / 3e-155 Major facilitator superfamily protein (.1.2) AT1G69850 445 / 2e-150 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G59740 440 / 2e-148 Major facilitator superfamily protein (.1) AT1G33440 431 / 1e-144 Major facilitator superfamily protein (.1) AT5G62730 411 / 3e-137 Major facilitator superfamily protein (.1) AT2G02040 405 / 6e-135 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G01180 395 / 3e-131 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54140 389 / 1e-128 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G68570 382 / 1e-125 Major facilitator superfamily protein (.1) AT1G62200 372 / 7e-122 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036200 [exp] 1001 / 0 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.004G064100 [exp] 527 / 0 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.001G272900 [exp] 496 / 8e-171 AT1G59740 407 / 1e-135 Major facilitator superfamily protein (.1) Potri.005G001400 [exp] 490 / 9e-168 AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1) Potri.010G034300 [exp] 447 / 1e-151 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.003G000800 [exp] 447 / 7e-151 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.004G229000 [exp] 443 / 3e-149 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 434 / 9e-146 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.012G070700 [exp] 433 / 9e-146 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032876 [exp] 810 / 0 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 795 / 0 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10002793 [exp] 681 / 0 AT1G27040 418 / 7e-141 Major facilitator superfamily protein (.1.2) Lus10015240 [exp] 506 / 6e-174 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 503 / 3e-173 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10037217 [exp] 454 / 3e-154 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10033101 [exp] 448 / 9e-152 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10036710 [exp] 447 / 2e-151 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 435 / 2e-146 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10035516 [exp] 431 / 3e-145 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.002G129500.1 pacid=42778314 polypeptide=Potri.002G129500.1.p locus=Potri.002G129500 ID=Potri.002G129500.1.v4.1 annot-version=v4.1 ATGGACGTCTCCAGAGATATTAAAGTCGAACCCAAGCGAGAAAGAAGGCGAGGAGGAAACAGAGCGGCACTGTTTGTGTTCGCTGCGGAGGGACTAGAGA ACATGGCATTCGTCTCTATGGCCGTCAGCCTGGTGACTTATTTCTATGGGTACATGAACTTCAGCTTAACAAAATCTGCCACAACACTTACCAACTTCAT GGGTACTTCATTTTTAGTGGCGCTGTTTGGAGGGTTCATTTGCGACACCTATATGACAAGATTCAAGGCTTGTGTCTTGTTTGGATGCGTGGAGTTTATG GGATATGGCCTCCTAACAGTCCAAGCTCACTTCCACCATCTAAGACCAAGTCCTTGCAAAGGTGTTTCACCAGACCAATGTGAGGGTGCAGATGGGAGCC AAGCTGCAATACTTTTCGCCGGTCTGTACCTTATTGCGTTTGGTACTAGTGGTGTCAAAGCTTCTTTGCCATCATTAGGAGCTGATCAATTCGACGAGAA TGACCCTAAGGAGGCATCTCAATTGTCTAGTTTTTTCAACTGGTTCTTGTTTAGCATCACCATTGGAGCTATACTAGGAGTCACGATTATTGTATGGATA AGTACTAACCAAGGGTGGGATTTGGGTTTTGGTGTGTGTGCTATAGCAGTCCTTCTTGCTATTATCTTTGCAAGCATGGGCAAGTCCTTGTATCGCAACA ATGTGCCCAAGGGAAGCCCCCTCACAAGCTTTGCGCAGGTATTTGTGGCTGCAATCCGGAACCGAGGCCTTCCAATTCCAGAGAAGGCAGAAGAATTGCA TGAAATTCATAACAAAGATGCAGGGGTGAAACGAGAAATTCTTCCATGGACTGACCAATTCAGGTTCTTGGACCGGGCAGCAATCGCAAAGACTACTAAC GATGCGTCAACATCAATCAGCCATCGACCCTGGAGGCTATGCACAGTGACACAAGTTGAAGAAACAAAGATCCTAATCCGCATGCTTCCAATTATACTTA GCACTGTTTTCATGAACACATGCTTGGCTCAGCTCCAGACTTTTTCGGTCCAACAGAGCATCACAATGGACACACGTGTGTTTGGCTTCCAAGTGCCTGG CCCCTCACTACCAGTAATCCCCCTGCTATTCATGTTTGTTCTAATCCCCATATACGAACGCGTTTTCGTACCTCTTGCTCGAAAAATCACAGGGATTCCA ACTGGAATTCGACAGCTCCAGCGCGTTGGAGTCGGTCTAGTGCTCTCAGCAATCTCCATGGCAGTTGCTGGAATTGTGGAAACAAGTCGCAAATCGGTGG CTGTTGAACACAACATGGTTGACTCAACTGAGCCGTTGCCAATGAGTTTCTTATGGCTTGGGTTCCAATATGCCATTTTTGGAGCAGCTGATATGTTCAC ATTGGTTGGGCTGCTAGAATTTTTCTACGCAGAGAGCTCGGCTGGTATGAAATCGCTGAGCACAGCAATCTCATGGTGTTCACTGGCATTTGGCTACTTC TCGAGCACTGTGGTGGTAGAGGTGGTAAACAAAGTTACTGGTGGATGGCTGGCTAATAACAATTTGAATAGAGACAAGTTGAACTACTTTTACTGGCTAT TAGCAGGGATAAGCATAGTGAATTTTGGAGTTTACTTGGCTTGTGCATCTTGGTATAGATATAAGAAAGGGGGGGAAGTGAATCAAATAGAAAACGGTGG TGGGGGCGATGCCAAGGGAAAAGCTCAGATGGTATGA
AA sequence Show only first row Show all	>Potri.002G129500.1 pacid=42778314 polypeptide=Potri.002G129500.1.p locus=Potri.002G129500 ID=Potri.002G129500.1.v4.1 annot-version=v4.1 MDVSRDIKVEPKRERRRGGNRAALFVFAAEGLENMAFVSMAVSLVTYFYGYMNFSLTKSATTLTNFMGTSFLVALFGGFICDTYMTRFKACVLFGCVEFM GYGLLTVQAHFHHLRPSPCKGVSPDQCEGADGSQAAILFAGLYLIAFGTSGVKASLPSLGADQFDENDPKEASQLSSFFNWFLFSITIGAILGVTIIVWI STNQGWDLGFGVCAIAVLLAIIFASMGKSLYRNNVPKGSPLTSFAQVFVAAIRNRGLPIPEKAEELHEIHNKDAGVKREILPWTDQFRFLDRAAIAKTTN DASTSISHRPWRLCTVTQVEETKILIRMLPIILSTVFMNTCLAQLQTFSVQQSITMDTRVFGFQVPGPSLPVIPLLFMFVLIPIYERVFVPLARKITGIP TGIRQLQRVGVGLVLSAISMAVAGIVETSRKSVAVEHNMVDSTEPLPMSFLWLGFQYAIFGAADMFTLVGLLEFFYAESSAGMKSLSTAISWCSLAFGYF SSTVVVEVVNKVTGGWLANNNLNRDKLNYFYWLLAGISIVNFGVYLACASWYRYKKGGEVNQIENGGGGDAKGKAQMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27040			Major facilitator superfamily ...		Potri.002G129500 [exp]	0	1
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.002G209602 [exp]	3.16	0.9891
AT3G01190			Peroxidase superfamily protein...		Potri.019G063201 [exp]	4.58	0.9876
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139600 [exp]	6.48	0.9832	CYP749A9
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.004G208700 [exp]	7.07	0.9697
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Potri.002G052100 [exp]	7.34	0.9741	CPS.1
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.006G248500 [exp]	7.74	0.9836
AT3G01190			Peroxidase superfamily protein...		Potri.011G027300 [exp]	8.00	0.9810
					Potri.019G016100 [exp]	8.48	0.9784
AT5G15180			Peroxidase superfamily protein...		Potri.007G122451 [exp]	8.48	0.9806
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G272500 [exp]	9.89	0.9827

Compare expression of checked genes

Potri.002G129500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.