Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47655 101 / 6e-26 DOF Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 94 / 1e-22 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT5G66940 93 / 1e-22 DOF AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1) AT5G62940 94 / 6e-22 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) AT3G21270 91 / 7e-22 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT1G51700 90 / 7e-22 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT3G50410 92 / 8e-22 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1) AT2G28510 92 / 1e-21 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT2G28810 92 / 1e-21 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT5G60850 92 / 1e-21 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036600 [exp] 274 / 8e-93 AT1G47655 128 / 2e-36 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G036400 [exp] 99 / 1e-24 AT3G50410 170 / 2e-52 OBF binding protein 1 (.1) Potri.012G081300 [exp] 94 / 3e-22 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.005G131600 [exp] 92 / 3e-22 AT3G50410 126 / 3e-35 OBF binding protein 1 (.1) Potri.012G018700 [exp] 93 / 4e-22 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.015G048300 [exp] 93 / 6e-22 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.014G100900 [exp] 92 / 7e-22 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.003G144500 [exp] 92 / 7e-22 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G238400 [exp] 93 / 8e-22 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042114 [exp] 91 / 5e-23 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10029767 [exp] 93 / 3e-22 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1) Lus10017313 [exp] 93 / 5e-22 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10003207 [exp] 94 / 7e-22 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10003208 [exp] 94 / 1e-21 AT4G24060 167 / 3e-48 Dof-type zinc finger DNA-binding family protein (.1) Lus10010113 [exp] 93 / 1e-21 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10016566 [exp] 93 / 1e-21 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10029458 [exp] 92 / 1e-21 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10012619 [exp] 92 / 2e-21 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10036172 [exp] 91 / 2e-21 AT3G55370 109 / 3e-28 OBF-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.002G129600.2 pacid=42777680 polypeptide=Potri.002G129600.2.p locus=Potri.002G129600 ID=Potri.002G129600.2.v4.1 annot-version=v4.1 ATGCCATCAGAAATAAGCCAGACACACCCAAACGAAGCCCAAAACACCATGGGGACTGCACCCCCACCACCAAAAACGACTGAGCCACTGCCCTGTCCAA GGTGTAACTCCACCATCACCAAGTTTTGCTACTTCAACAACTATAACCTCTCTCAACCTCGCTATTTCTGCAAGTCATGCCGACGTTACTGGACAAAAGG TGGGACCCTCCGTGATGTGCCTGTTGGTGGTGGTTCACGCAAGAACTCCAAGCGCTCTCGCTCATCTTCTAATAATTCTTCACCATCTACCTCATCTTCC AACTCCACTGCCTCAAATCCTGCAACTTTGACTGCTTTTACCGCCATCCATGAGCCCGAATCAATACCCGTGGTTGTATCCTCGACTACAGACTCTGGTG CAGCTGCTGTGAAGACTGAGATGCCAGCGGGCATAAATCTGAATGAGGGGTTGGCTGAAAATGGAAACTTCATCTCGCTTATAAGCTCTAATGATCAACA TGGGTTCAATAGTCTTGGCGGGTACGGTTACGGATCAGGATTTGGACTGGGGCCTTGTGAAGTGGGTCTTGGATTTGGTGCAAGAGGGTTTTGGTCCTTT CCTGGAATGGAAAATGTTTCTGTTAATGGTGGAACCATAGGGGGTTGTACTTCTGGGTGCAATACTTGGCAGCTGCAGGGTGATCATGTTGAAGGAGGGG GTAGTCAAGGTGGGTTTGCAGCTGATGGTGAGAATTACTTTGGTTCTTGGCCTGGTCTTGTTATTTCTGCTCCAGCAGAGAAAGGTTTGAACTGA
AA sequence Show only first row Show all	>Potri.002G129600.2 pacid=42777680 polypeptide=Potri.002G129600.2.p locus=Potri.002G129600 ID=Potri.002G129600.2.v4.1 annot-version=v4.1 MPSEISQTHPNEAQNTMGTAPPPPKTTEPLPCPRCNSTITKFCYFNNYNLSQPRYFCKSCRRYWTKGGTLRDVPVGGGSRKNSKRSRSSSNNSSPSTSSS NSTASNPATLTAFTAIHEPESIPVVVSSTTDSGAAAVKTEMPAGINLNEGLAENGNFISLISSNDQHGFNSLGGYGYGSGFGLGPCEVGLGFGARGFWSF PGMENVSVNGGTIGGCTSGCNTWQLQGDHVEGGGSQGGFAADGENYFGSWPGLVISAPAEKGLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47655	DOF		Dof-type zinc finger DNA-bindi...		Potri.002G129600 [exp]	0	1
AT1G62050			Ankyrin repeat family protein ...		Potri.004G013500 [exp]	2.00	0.8939
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.007G110700 [exp]	3.00	0.8730
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.009G132100 [exp]	5.65	0.8740	PtrAUX6,Pt-LAX5.1
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.003G204500 [exp]	7.74	0.8365
AT5G22930			Protein of unknown function (D...		Potri.004G216100 [exp]	8.94	0.8166
AT4G23720			Protein of unknown function (D...		Potri.001G096000 [exp]	9.53	0.8310
AT3G53190			Pectin lyase-like superfamily ...		Potri.006G122000 [exp]	13.41	0.8703
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Potri.002G249200 [exp]	14.56	0.7442	AIR12.1
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.015G009300 [exp]	15.62	0.7763
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.014G027100 [exp]	16.58	0.8340	Pt-HSFB4.2

Compare expression of checked genes

Potri.002G129600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.