Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	KO,GA3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25900 665 / 0 ATKO1, CYP701A3, GA3 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) AT2G40890 179 / 5e-50 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G37430 178 / 1e-49 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT4G37400 173 / 6e-48 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT2G45560 173 / 8e-48 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G74550 169 / 2e-46 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT4G37340 167 / 1e-45 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37410 165 / 7e-45 CYP81F4 "cytochrome P450, family 81, subfamily F, polypeptide 4", cytochrome P450, family 81, subfamily F, polypeptide 4 (.1) AT2G45570 162 / 6e-44 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G52970 161 / 2e-43 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G031100 [exp] 184 / 7e-52 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.006G033300 [exp] 180 / 3e-50 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.002G150100 [exp] 177 / 2e-49 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.016G031000 [exp] 176 / 6e-49 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.002G150200 [exp] 172 / 1e-47 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.014G020600 [exp] 171 / 3e-47 AT4G37370 479 / 4e-166 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G150300 [exp] 170 / 8e-47 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 170 / 9e-47 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.014G020500 [exp] 166 / 2e-45 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011667 [exp] 686 / 0 AT5G25900 624 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10032750 [exp] 670 / 0 AT5G25900 619 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10042641 [exp] 637 / 0 AT5G25900 595 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10032747 [exp] 630 / 0 AT5G25900 592 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10042640 [exp] 622 / 0 AT5G25900 582 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10022898 [exp] 602 / 0 AT5G25900 567 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10025749 [exp] 184 / 7e-52 AT3G52970 441 / 9e-151 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10002839 [exp] 183 / 1e-51 AT3G52970 390 / 4e-131 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10042815 [exp] 181 / 2e-50 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10021136 [exp] 180 / 3e-50 AT3G52970 436 / 5e-149 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.002G129700.1 pacid=42780047 polypeptide=Potri.002G129700.1.p locus=Potri.002G129700 ID=Potri.002G129700.1.v4.1 annot-version=v4.1 ATGGATGTTGCAACTTCAATTCTTCCAGCTTTTCAAGCGATGCCCTATGCCACTCCTGCTGCCGTGGGTGGCCTGGTCTTTGCAGTGTTCTTCATCAACA AGTTCATCTCCAATCAAAAGAAAGGAAACCCCAACCTCCTTCCTTTACCAGTGGTGCCAGGATGGCCAGTCATAGGGAATTTGCTGCAACTGAAGGAGAA GAAACCACACAAGACGTTCTTAAGGTGGGCTGAGGCTTATGGGCCAATCTATTCCATAAAGACCGGTGCTTCTACTGTGATTGTTCTCAATTCAACTGAA GTTGCAAAGGAGGCCATGGTGACTAGATATTCGTCCATATCAACAAGAAAACTATCAAAGGCCTTGGAAGTTCTTACAGATAATAAATCTATGGTTGCAA CAAGTGATTATGGCGACTTTCACAAGATGGTGAAGCGGTATTTACTTACAAATGTACTCGGAGCTGGTGCTCAGAGACGACACCGGGGTCACAGGGATAC CTTGGTAGAAAATGTTTCAAGTCAATTGCTTGATCATATAAAGACCAATCCTCAATTACAAGCTGTGGATTTCAGGGAAATATTTGAGTCTGAACTTTTT GGATTGTCAATGAAAGAAGCTTTAGGAAAAGATATGGAATCTCTATATGTAGATGAACTTCAGGCCACTTTATCAAGAGAGGAGATTTTCAATGTTCTGG TGCTTGATCCTATGGAGGGTGCAATTGATGTTGACTGGAGAGATTTCTTTCCATATTTGAGATGGATTCCTAATAAGGGTTTTGAAATGAAAATCGAGCG AATGAATTTTCGCAGGCAATCGGTGATGAATGCCCTTGTGCAGGAGCAGAAGAAACGAATTGCATCTGGAGAGGAAATAAATTGTTATATTGACTACTTA TTATCGGAAGGCAAAACTACACTTACGGAGAAGCAAATTGGTATGCTGGTTTGGGAGACAATTATTGAGACATCAGATACAACTATGGTCACTACAGAAT GGGCCATGTATGAACTAGCGAAGAACCCAAAATGCCAGGATCGGCTCTATCATGAAATCCAAAATGTCTGTGGGTCTGAGAAGCTTAAAGAGGAACACCT GTCCCAACTGCCATACTTAAATGCTGTTTTCCATGAAACTATTAGAAAGTACAGTCCTGCTCCTATTATACCTTTGAGATATGCTCATGAAGATACACAG ATAGGGGGCTACTATGTTCCAGCTGGAAGTGAGATCGCTATTAACATTTATGGATGTAACATGGACAAGAAGCGTTGGGAAAACCCTGAAGAGTGGAAGC CTGAGAGATTCCTTGACGGCAAATATGATCCCATGGACTTGCACAAGACAATGGCATTTGGAGCAGGAAAGAGGTCATGCGCAGGTGCTCTTCAAGCGTC CTTGATAGCATCTGCCACGATTGGCAAGGTAGCACAAGAATTTGAATGGAGACTTAAAGATGGAGAGGAAGAACATGTTGATACTGTTGGACTCACCACT CGCAAGCTTCAGCCGCTGCATGTCATGATAAAAACAAGAAATGTGTAG
AA sequence Show only first row Show all	>Potri.002G129700.1 pacid=42780047 polypeptide=Potri.002G129700.1.p locus=Potri.002G129700 ID=Potri.002G129700.1.v4.1 annot-version=v4.1 MDVATSILPAFQAMPYATPAAVGGLVFAVFFINKFISNQKKGNPNLLPLPVVPGWPVIGNLLQLKEKKPHKTFLRWAEAYGPIYSIKTGASTVIVLNSTE VAKEAMVTRYSSISTRKLSKALEVLTDNKSMVATSDYGDFHKMVKRYLLTNVLGAGAQRRHRGHRDTLVENVSSQLLDHIKTNPQLQAVDFREIFESELF GLSMKEALGKDMESLYVDELQATLSREEIFNVLVLDPMEGAIDVDWRDFFPYLRWIPNKGFEMKIERMNFRRQSVMNALVQEQKKRIASGEEINCYIDYL LSEGKTTLTEKQIGMLVWETIIETSDTTMVTTEWAMYELAKNPKCQDRLYHEIQNVCGSEKLKEEHLSQLPYLNAVFHETIRKYSPAPIIPLRYAHEDTQ IGGYYVPAGSEIAINIYGCNMDKKRWENPEEWKPERFLDGKYDPMDLHKTMAFGAGKRSCAGALQASLIASATIGKVAQEFEWRLKDGEEEHVDTVGLTT RKLQPLHVMIKTRNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Potri.002G129700 [exp]	0	1	KO,GA3.1
AT1G07630		PLL5	pol-like 5 (.1)		Potri.006G085000 [exp]	7.34	0.8571
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Potri.001G090200 [exp]	8.66	0.8780
AT1G13970			Protein of unknown function (D...		Potri.010G163100 [exp]	12.84	0.8145
AT5G55860			Plant protein of unknown funct...		Potri.001G369200 [exp]	15.29	0.8117
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Potri.006G270500 [exp]	20.37	0.7829
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Potri.005G045900 [exp]	21.49	0.8603
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Potri.016G056800 [exp]	24.61	0.8337
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.016G068200 [exp]	31.73	0.7957
AT5G41620			unknown protein		Potri.014G093400 [exp]	32.86	0.7704
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.006G023600 [exp]	34.14	0.8093

Compare expression of checked genes

Potri.002G129700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.