Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 233 / 2e-73 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 94 / 6e-21 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G34400 75 / 2e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 66 / 6e-12 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18960 64 / 2e-11 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G06220 63 / 2e-11 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT3G53310 64 / 3e-11 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 61 / 7e-11 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G06160 62 / 1e-10 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT5G66980 60 / 1e-09 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036900 [exp] 375 / 3e-128 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 343 / 5e-116 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 112 / 5e-27 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.009G108500 [exp] 111 / 5e-27 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 103 / 2e-24 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 105 / 3e-24 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 100 / 7e-23 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 78 / 3e-15 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 74 / 3e-14 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032871 [exp] 313 / 2e-103 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10016285 [exp] 260 / 5e-82 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10032873 [exp] 160 / 5e-44 AT4G33280 129 / 1e-33 AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 146 / 7e-39 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10016286 [exp] 110 / 2e-27 AT4G33280 166 / 7e-49 AP2/B3-like transcriptional factor family protein (.1) Lus10027940 [exp] 90 / 2e-19 AT3G18990 371 / 4e-128 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032749 [exp] 71 / 5e-15 AT4G33280 59 / 1e-11 AP2/B3-like transcriptional factor family protein (.1) Lus10012041 [exp] 74 / 5e-14 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010080 [exp] 64 / 6e-11 AT4G31680 75 / 8e-16 Transcriptional factor B3 family protein (.1) Lus10042406 [exp] 64 / 7e-11 AT4G31690 130 / 3e-34 Transcriptional factor B3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G129800.2 pacid=42778580 polypeptide=Potri.002G129800.2.p locus=Potri.002G129800 ID=Potri.002G129800.2.v4.1 annot-version=v4.1 ATGGGAGAAGAGACGTGCAAGGAATGCAGGAGCTGGGAAGAGAAAATATATTGGACCCATTTCCAGTGCGTACAGTTCTCTCAGTTCCTCCATTCTGGAT TTGATCAACGCCTGGCTATCCCTGAAATATTTGCTAGACATCTGAGAAAGAAGTTGCCTGATACTGTGAATCTTAAAGGTCCTAGTGGGGCTGCATGGGA AGTTGGACTAACAACCTACAATAATACCCTATTCTTCAATCATGGTTGGCAAGAATTTGTCAAGGACCATGCTCTTGAAGAGAATGATTTCTTGATCTTT AAGTACAATGGGGAGTCGGACTTCGATGTCTTAATGTTCGATATGCAGAGCATGTGTGAGAAGGTTGCTCCATACTTCGTCAAAAAATATGAATCTGCAG AACGTGGCAATGGCTGTCGAACAAAAAGAAAAACTGTTAAAAGTTCTGTTGGAGTTGTTTATGCCTCTCCTAAGGGTGTAGTTGGAGGTTCTCAACCTGA GGAATTTAAAGACAATGATACTGATGCAATACCAGTTGGGCAACCCATTGTCTCCCGAGTTACTGACAAGAAAATCTGTAGGGGAATCAAGTCAACTGAG GGCACTGAAGAGGATGTTGTTGGAGGTTCCCAACAGGAGGAGTGTACATATAATGGTTCTGACACGATACCACCACTAAGGCAGCCTATTATCTCCCCAA TTGGTAAGAAGAAAATTACGAGGGAAATTAAGTCAATCAAGCCTGTTCAATACTGGCGTGTTGTCAAAAGTAGAGGACCTTCTACTCGTGAGGAAATAGA GGCTGAACCTGATGTTCAGTCCCTAGGCCAACCAGTGGATACTGTGCACCATGCAAGGAAAGGAAGGGAAGTAACAGAGGAAGAGAAAAGGAATGCAGTG CAATTGGCTGCAAGAGCCGTAACCGAGAATGGTTTCCTTGTACTCATGAAGCCCACACATGTGTATGGGAGATTCTTTGTGGCAATTCCTTCAGCATGGC TAGCTACACATCTTCCCATTAAAGGAAATCAAGATGTGATTCTACGTTTTAAAGATCGAGCATGGCACACCAGATTCTTCTATCACAAGTCTCGTAATAA CGGAGGGCTGACTGCTGGGTGGAAGAAATTTGCCTTGGACAACAATTTGCATGAATTTGATGTGTGCGTATTTGAACCTCTGGACCTGGTAAACTACCCA ATTATCCTGAATGTCAGCATCTTTCGTGTCGTCGAAGAAGCAAGTCCAATTACCTCACAAGAGGACGAGAAAAAATCGCAGGGCCATGCATGA
AA sequence Show only first row Show all	>Potri.002G129800.2 pacid=42778580 polypeptide=Potri.002G129800.2.p locus=Potri.002G129800 ID=Potri.002G129800.2.v4.1 annot-version=v4.1 MGEETCKECRSWEEKIYWTHFQCVQFSQFLHSGFDQRLAIPEIFARHLRKKLPDTVNLKGPSGAAWEVGLTTYNNTLFFNHGWQEFVKDHALEENDFLIF KYNGESDFDVLMFDMQSMCEKVAPYFVKKYESAERGNGCRTKRKTVKSSVGVVYASPKGVVGGSQPEEFKDNDTDAIPVGQPIVSRVTDKKICRGIKSTE GTEEDVVGGSQQEECTYNGSDTIPPLRQPIISPIGKKKITREIKSIKPVQYWRVVKSRGPSTREEIEAEPDVQSLGQPVDTVHHARKGREVTEEEKRNAV QLAARAVTENGFLVLMKPTHVYGRFFVAIPSAWLATHLPIKGNQDVILRFKDRAWHTRFFYHKSRNNGGLTAGWKKFALDNNLHEFDVCVFEPLDLVNYP IILNVSIFRVVEEASPITSQEDEKKSQGHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.002G129800 [exp]	0	1
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	1.41	0.8173
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G098900 [exp]	9.48	0.7690
AT4G34560			unknown protein		Potri.004G157300 [exp]	11.22	0.7463
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Potri.001G178100 [exp]	13.60	0.7173
AT5G02640			unknown protein		Potri.016G081600 [exp]	16.24	0.7515
AT1G54610			Protein kinase superfamily pro...		Potri.002G065100 [exp]	17.60	0.7656
AT5G25170			PPPDE putative thiol peptidase...		Potri.018G021700 [exp]	18.97	0.7853
AT1G75060			unknown protein		Potri.014G041200 [exp]	22.49	0.7650
					Potri.001G444100 [exp]	27.16	0.7837
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.014G145200 [exp]	27.38	0.6919

Compare expression of checked genes

Potri.002G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.