Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 237 / 1e-75 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 100 / 9e-24 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G34400 74 / 3e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 65 / 6e-12 B3 REM19, RTV1 related to vernalization1 1 (.1) AT5G60130 62 / 2e-10 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT3G06220 57 / 1e-09 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT3G06160 58 / 3e-09 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT5G66980 57 / 7e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G16640 51 / 6e-08 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 51 / 2e-07 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036900 [exp] 590 / 0 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 331 / 2e-111 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 99 / 1e-22 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 77 / 1e-15 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 61 / 4e-10 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 60 / 7e-10 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 60 / 7e-10 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 55 / 1e-08 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 55 / 1e-08 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032871 [exp] 320 / 2e-107 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 211 / 4e-64 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10016286 [exp] 187 / 8e-57 AT4G33280 166 / 7e-49 AP2/B3-like transcriptional factor family protein (.1) Lus10016285 [exp] 141 / 1e-37 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10032873 [exp] 140 / 2e-37 AT4G33280 129 / 1e-33 AP2/B3-like transcriptional factor family protein (.1) Lus10032749 [exp] 58 / 1e-10 AT4G33280 59 / 1e-11 AP2/B3-like transcriptional factor family protein (.1) Lus10042406 [exp] 59 / 2e-09 AT4G31690 130 / 3e-34 Transcriptional factor B3 family protein (.1) Lus10019652 [exp] 56 / 2e-09 AT3G18990 53 / 6e-09 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027940 [exp] 58 / 3e-09 AT3G18990 371 / 4e-128 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026264 [exp] 57 / 1e-08 AT2G24700 174 / 2e-48 Transcriptional factor B3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G129900.2 pacid=42779926 polypeptide=Potri.002G129900.2.p locus=Potri.002G129900 ID=Potri.002G129900.2.v4.1 annot-version=v4.1 ATGGGAGAAGAAACATGTGAAGATTGCAGAAGCTGGGAAGAGGAACTGTATTGGACCCATTTCCAGTGCACCCATTTTTCGCAGATTCTCGATGCTGGTT TTGGTCATCATCTTCCGATCCCTGAAAAATTTTCTAATCATTTGAAAAAGAAATTGCCCGAAAATGTAATTCTTAAAGGTCCTAGTGGCGGTACTTGGCA AGTTGAACTGACCACAGATGATGACACCATGTTCTTCAAAAATGGCTGGGAAGAATTTGTAAAGGACCATTTTCTGGAAAAAGATTTGTTGATCTTCAAG TACAACCGGGAGTCATGTTTTGAAGTTCTAATTTTTGATGGACAAAGCTTGTGTGAGAAGGCAGCTTCATATTTTGTCAGAAAATGTGGGCACCGAGAAC GTGACAGTTTTGTCCATGCAAAGAGGAAAACTGTAGAAGATTCTGCTGAAGTTACTATTGCCTGCCCCCAGGATAGTCTTGGAGGCACTGCAGAGAAATC TGCAAATGATTATATTTACAAAACACCTGTAGAAAACACTGTTATCTCAGAAGCTATTAATAAAAAGACTCGGAGGGAAATCAAGTTTAGTAAGCCGACC CAAACTAGGCAGAGTGTGAGATATGAAGAACCTTCTTCTACTGATGAGGAAACAGAAACTAAACCTGATGTTGAGCATATACCTATCAACGCGCCATATG TATCAAGTAGAAGGATGGTAACAGAGGAAGACAAACTCAATGCATTGCGGTTAGCACAAACAGCACAATCCAACGAGGGCTTCGTAGTGGTTATGAAACC AACACATGTATACAGGAAATTTTACATGGTAATCCCTTCAGGATGGGCGAATAGATATTTCAGAACTCTGGAAAAGAAAGACGTGATTCTTCGCATGAAA GAAAATACGCGGAACACCAAATTTTTATATTGTAAATCTAAGAACAGCGGAGGGCTTTCTTCTGGGTGGAGGAATTTTGCTTTGGATAACAAATTACAGG AGTTTGATGTGTGCCTTTTTGAACCTAGCAGCGCAGTGAACAATTCTATTGTCTTCGATGTTAGTATCTTTCGTGTTCTCTAG
AA sequence Show only first row Show all	>Potri.002G129900.2 pacid=42779926 polypeptide=Potri.002G129900.2.p locus=Potri.002G129900 ID=Potri.002G129900.2.v4.1 annot-version=v4.1 MGEETCEDCRSWEEELYWTHFQCTHFSQILDAGFGHHLPIPEKFSNHLKKKLPENVILKGPSGGTWQVELTTDDDTMFFKNGWEEFVKDHFLEKDLLIFK YNRESCFEVLIFDGQSLCEKAASYFVRKCGHRERDSFVHAKRKTVEDSAEVTIACPQDSLGGTAEKSANDYIYKTPVENTVISEAINKKTRREIKFSKPT QTRQSVRYEEPSSTDEETETKPDVEHIPINAPYVSSRRMVTEEDKLNALRLAQTAQSNEGFVVVMKPTHVYRKFYMVIPSGWANRYFRTLEKKDVILRMK ENTRNTKFLYCKSKNSGGLSSGWRNFALDNKLQEFDVCLFEPSSAVNNSIVFDVSIFRVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.002G129900 [exp]	0	1
					Potri.003G217500 [exp]	1.00	0.9697
					Potri.001G233550 [exp]	10.86	0.8671
AT3G26350			unknown protein		Potri.010G049000 [exp]	13.49	0.9388
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Potri.001G136700 [exp]	14.69	0.9230
AT2G38890			unknown protein		Potri.008G044500 [exp]	15.23	0.9481
AT1G03180			unknown protein		Potri.005G208700 [exp]	16.27	0.9499
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Potri.003G072000 [exp]	17.88	0.9295
AT4G10950			SGNH hydrolase-type esterase s...		Potri.003G141300 [exp]	18.16	0.9499
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Potri.010G071400 [exp]	20.32	0.9498
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.010G114800 [exp]	21.21	0.8416

Compare expression of checked genes

Potri.002G129900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.