Plant FIBer expression Database

Potri.002G130100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G47640 418 / 1e-150 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G037100
[exp]
459 / 4e-167 AT1G47640 414 / 4e-149 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032870
[exp]
412 / 3e-148 AT1G47640 400 / 2e-143 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09767 DUF2053 Predicted membrane protein (DUF2053)
Representative CDS sequence
>Potri.002G130100.1 pacid=42777301 polypeptide=Potri.002G130100.1.p locus=Potri.002G130100 ID=Potri.002G130100.1.v4.1 annot-version=v4.1
ATGACACTGTTTCACTTCTTCAACTGCGCGATTCTCACCTTCGGCCCTCACGCCGTCTATTACTCCGCCACTCCCTTGTCTGAGTACGACACACTTGGTA
CTTCTGTTAAAGCTGCTCTTGTTTATCTTGGAACTGCTTTAGTTAAGCTGGTTTGCTTGGCAACCTTTCTTAAGGTGTCTGAGAATGATAGCTTTGATCC
GTATCAGGAACTACTGAAAGCACTAATTGGATTTATCGATGTTGCTGGGCTGTACTTTGCCTTGACTCAATTGACTCATAGGAACATCTCCCAAAATCAT
AAATTTCAAGCTGTTGGACTTGGATGGGCTTTTGCTGATTCTGTTTTACATAGACTGGCACCTCTATGGGTGGGATCTAGAGGACTAGAATTCACATGGG
ATTACATTCTGCAAGGCCTTGAAGCAAACGCAAACTTGGTGTTGAGTATATCTCTTGCTGCTTTGGGATCTCTGATGTGGCTTCGGAAAAATAAACCCAA
GACTTTGATTCCCATCATATATGCATGTGCGGGAATTGTGGCAACCATGCCATCCATCACAAGCTACTTGAGAAGAGGATTGGGGTGGCATTTTCCTAAG
GTGGTAGGCTTTGAACTGTTCACCTCTCTGATGATGGCTTTTATTAGCTGGCAGCTCTTTTCTGCATGTCAAAGACCCTCTTCTTGA
AA sequence
>Potri.002G130100.1 pacid=42777301 polypeptide=Potri.002G130100.1.p locus=Potri.002G130100 ID=Potri.002G130100.1.v4.1 annot-version=v4.1
MTLFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDSFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNH
KFQAVGLGWAFADSVLHRLAPLWVGSRGLEFTWDYILQGLEANANLVLSISLAALGSLMWLRKNKPKTLIPIIYACAGIVATMPSITSYLRRGLGWHFPK
VVGFELFTSLMMAFISWQLFSACQRPSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G47640 unknown protein Potri.002G130100
[exp]
0 1
AT3G60820 PBF1 N-terminal nucleophile aminohy... Potri.014G069800
[exp]
2.82 0.9179 PBF1.2
AT5G23540 Mov34/MPN/PAD-1 family protein... Potri.002G127900
[exp]
8.77 0.8593
AT3G22110 PAC1 20S proteasome alpha subunit C... Potri.006G008800
[exp]
10.00 0.8575 Pt-PAC1.1
AT2G40660 Nucleic acid-binding, OB-fold-... Potri.019G058700
[exp]
10.77 0.8115
AT1G09150 pseudouridine synthase and arc... Potri.005G023600
[exp]
11.04 0.8888
AT3G05000 Transport protein particle (TR... Potri.013G031000
[exp]
11.31 0.8582
AT2G46540 unknown protein Potri.002G173101
[exp]
12.64 0.8666
AT1G16470 PAB1 proteasome subunit PAB1 (.1.2) Potri.015G122400
[exp]
17.66 0.8711
AT5G59613 unknown protein Potri.008G053000
[exp]
18.73 0.8576
AT5G65430 14-3-3KAPPA, GF... 14-3-3 PROTEIN G-BOX FACTOR14 ... Potri.002G103800
[exp]
18.97 0.8398 VF14.1

Potri.002G130100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.