Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55200 535 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G13690 533 / 2e-180 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G56790 491 / 5e-165 Protein kinase superfamily protein (.1) AT1G26150 257 / 9e-75 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT3G24540 248 / 6e-74 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G68690 251 / 5e-73 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT3G24550 249 / 6e-73 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G52290 244 / 2e-72 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT5G38560 246 / 1e-71 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT4G34440 246 / 1e-71 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038300 [exp] 1218 / 0 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G200000 [exp] 562 / 0 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G034900 [exp] 561 / 0 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 458 / 4e-152 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 256 / 5e-76 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 256 / 1e-75 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 251 / 1e-73 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 249 / 6e-73 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 246 / 2e-72 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006148 [exp] 566 / 0 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 387 / 1e-122 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 363 / 6e-116 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10030950 [exp] 327 / 2e-100 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009559 [exp] 305 / 6e-92 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 302 / 3e-91 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011657 [exp] 303 / 1e-90 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011098 [exp] 253 / 3e-74 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 250 / 1e-72 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10042327 [exp] 248 / 1e-72 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G130300.1 pacid=42776938 polypeptide=Potri.002G130300.1.p locus=Potri.002G130300 ID=Potri.002G130300.1.v4.1 annot-version=v4.1 ATGTTTCAGGAGAAAACTGAACAACAACAGAGCCAGCAACGCGCCACGAACACGGTGGCAGACCAAGTGGTGATCGCAGTGAAAGCAGAGAAAGTGATGT CCAAGGCAGCATTGGCTTGGGCTCTCACTCACGTTGTCCATCCTGGAGATTGCATAACGTTGCTTGCTGTCTTTACAAACGAAAAATCCGGTAAAAAATT CTGGAACTTTCCGAGGCTGGCAGGAGATTGTGGGAGCAATCAACTTGAGAGGTTGCCGGATCGTGTTTGTGAAATATCTGAGAATTGTTCTCAGATGGTG CTTCAGTTTCATAACCAAATCGAGGTTGGAGTAAGGATTAAGGTGGTATCAAGTACACCCGGCAGTGTCGTGGCAGCTGAAGCAAGGCGCAATGGAGCCA ACTGGGTTGTACTGGACAAAAAACTCAGGCAAGAGCTGAAGCACTGCATAGAGGAACTTCACTGCAACATTGTTGTAATGAAAGGTTCTAAAGCAAAAGT CCTTAGGCTTAACTTGGGAAGCTCGAATGAAATCCAAACCCCATACTATTCTGCTGCTTCTTCACCAGGAATGGACGTCGGAAAGCTGCTGGGACACAGT AAGAAGCATTCTACTCCAGTGAGCAGCCCTGAAGACCAAAGTACTTCATACTCAAGAACCAGAGAAGATTCATCGTCATTAAGCAATGATACAGAAATGC CGCCTTTTCTTGTTTATGAAAAAAATCCTCTTTTTGTAGGACTGAATGAAGAAAAATACACATCAAAAAATAATCAAAGCAACTACGATGACCAGCTTAG ATCTATGTACTCTGATGGGGAAAGAATCATTTCTTTATCAACGGATCCAATATCAGCTGTAACCAGTGATCAGAAGAGTGTATTTTGGATTCCCCAAAAC CACATTGTTGATGAGAAGGCCCCCATAACCCGGAATTGCAAAAATACTTGCGAAATTAAATCCCCAACTTCAAGAACTCTTCTTGATAAGTTTGTGCAAT ATGATCAAGATGCTCGGGCTGGGAGGCTCGACCATAGCCATCAAAAAGAGAATGTAAGCTCAGGTATCAAACATGCAGTTTCTTTAGGTAGAAGTTCTTC AGCGCCCCCTCCTTTATGTTCTTTGTGCCAACACAAGGCACCCACTTTTGGAAAACCTCCAAGACAGTTCTCTTATGAGGAGCTGGAGGAAGCTACAGAA GGATTCTCGGATATGAATTTCTTGGCGGAAGGTGGTTTTAGCAATGTTTACAGAGGGGTGTTAAGGGATGGGCAGGTAGTTGCAGTGAAGCTCTTAAAGT ATGGTGGCTCTCAAGCAGATGCTGATTTCTGCAGGGAAGTGAGGGTATTGAGCTGTGCACAACACAGGAACGTTGTGTTGTTAATTGGGTTTTGCATTGA TGGCAAGAAGAGAGTATTGGTTTACGAGTACATATGCAATAGGTCACTGGACTTCCATTTACACGGAAACAAAAGACCACCTCTAGATTGGAACCTAAGG ATGAAAATAGCAATCGGGACAGCAAGAGGTTTACGGTATCTTCATGAAGATTGCAGAGTGGGTTGTGTGGTGCACAGAGACATGAGGCCTAATAATATCC TCGTAACCCATGATTTTGAACCTATGGTTGCTGATTTTGGGCTAGCTAGGTGGCACGCTGAATGTAATATCAGTAGCGAAGGGCGAGTGAATAGAACTTC AGGGTATCTTGCACCAGAGTATATCAATAGTGGAAAGACTACGCCGACAGTTGATGTATTTGCATTTGGAGTGGTTTTATTAGAGCTAATGACAGGTCAA AGAATCAGCAAGTTGCAATTTTACAAGGGACAGGATTTTTTATCTGACTTGATCCACCCTGTCTCTGCATTAGAACCATGTCATGCCTTGGAAAATATTT ATCAATTACTGGATCCATGTTTGGCCTCAGAGCAACTCCCTGTCTTTGCCTATCAACTACAAGCTGTGGGCCTAGCCACTTCCTTGTGCCTCCGTCAAGA TCCAGAGACCAGACCTCCAATGTCAAAGGTCCTTAGAATACTTGAGGGAGGAGATTTAGCAGTTCCTCTGAGCTTAGACTTGAATTCAGTTGGCAATAGA AGTGGCCGTCTGCATGGTGTGAGCTTGAACACAAAGCCTGACGGAAGGAGGGGTCATTCTCGTAAGCTTTCTCACTGA
AA sequence Show only first row Show all	>Potri.002G130300.1 pacid=42776938 polypeptide=Potri.002G130300.1.p locus=Potri.002G130300 ID=Potri.002G130300.1.v4.1 annot-version=v4.1 MFQEKTEQQQSQQRATNTVADQVVIAVKAEKVMSKAALAWALTHVVHPGDCITLLAVFTNEKSGKKFWNFPRLAGDCGSNQLERLPDRVCEISENCSQMV LQFHNQIEVGVRIKVVSSTPGSVVAAEARRNGANWVVLDKKLRQELKHCIEELHCNIVVMKGSKAKVLRLNLGSSNEIQTPYYSAASSPGMDVGKLLGHS KKHSTPVSSPEDQSTSYSRTREDSSSLSNDTEMPPFLVYEKNPLFVGLNEEKYTSKNNQSNYDDQLRSMYSDGERIISLSTDPISAVTSDQKSVFWIPQN HIVDEKAPITRNCKNTCEIKSPTSRTLLDKFVQYDQDARAGRLDHSHQKENVSSGIKHAVSLGRSSSAPPPLCSLCQHKAPTFGKPPRQFSYEELEEATE GFSDMNFLAEGGFSNVYRGVLRDGQVVAVKLLKYGGSQADADFCREVRVLSCAQHRNVVLLIGFCIDGKKRVLVYEYICNRSLDFHLHGNKRPPLDWNLR MKIAIGTARGLRYLHEDCRVGCVVHRDMRPNNILVTHDFEPMVADFGLARWHAECNISSEGRVNRTSGYLAPEYINSGKTTPTVDVFAFGVVLLELMTGQ RISKLQFYKGQDFLSDLIHPVSALEPCHALENIYQLLDPCLASEQLPVFAYQLQAVGLATSLCLRQDPETRPPMSKVLRILEGGDLAVPLSLDLNSVGNR SGRLHGVSLNTKPDGRRGHSRKLSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	0	1
AT1G74160			unknown protein		Potri.012G061900 [exp]	1.00	0.8180
					Potri.019G023500 [exp]	3.00	0.7908
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Potri.004G153600 [exp]	4.00	0.7576
AT5G65290			LMBR1-like membrane protein (....		Potri.005G072100 [exp]	5.47	0.7478
AT3G61670			Protein of unknown function (D...		Potri.014G095700 [exp]	6.78	0.7993
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.014G174700 [exp]	9.21	0.7078
AT5G61820			unknown protein		Potri.012G110600 [exp]	9.79	0.7081
AT4G24970			Histidine kinase-, DNA gyrase ...		Potri.015G100900 [exp]	12.00	0.7321
AT5G04550			Protein of unknown function (D...		Potri.006G117000 [exp]	13.56	0.6794
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Potri.008G166500 [exp]	14.96	0.7084

Compare expression of checked genes

Potri.002G130300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.