Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26490 634 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 491 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 476 / 1e-165 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 476 / 2e-165 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 466 / 1e-161 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 454 / 6e-159 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 266 / 3e-84 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 244 / 4e-76 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 244 / 5e-76 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 232 / 4e-71 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038400 [exp] 863 / 0 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 538 / 0 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 521 / 0 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 512 / 6e-180 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 514 / 2e-179 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 264 / 7e-84 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 260 / 4e-82 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 258 / 1e-80 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 244 / 8e-76 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016289 [exp] 630 / 0 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 627 / 0 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 609 / 0 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 508 / 1e-178 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 401 / 5e-136 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016779 [exp] 402 / 1e-135 AT3G50390 435 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 398 / 2e-135 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 387 / 8e-131 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 375 / 3e-125 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 250 / 2e-78 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.002G130400.1 pacid=42780224 polypeptide=Potri.002G130400.1.p locus=Potri.002G130400 ID=Potri.002G130400.1.v4.1 annot-version=v4.1 ATGATGAACGGAGGAAGAGGAGGAATAGGCTCAAGAATGGGAGATGAAGAAGAAATAGGCACAAAGTTTGTTGACACAGGAAACCATACGCCGAGATCGA AATTCGGTAACATGATGCATTCTGATCCAAACCTTTCAGCAACAGCAGCGGCAATACCCCGTGATGAAGTGTTCGGCTATCGAAATAGCAGTGCTTCCTT AACAGGTCCTGCCAGTTTTGACCCTAACAGGATGAGCTGTGAGGGGTCTCCTATGACCATGTCACCATGGAACCAAACCGGTGGTGGTTCCAATTTTCCG TGGTCATTCGAAGAAAACCTTCCTCAAAATGGGCTGATTGGTTCGCTTGTTCGCGAAGAAGGTCACATTTATTCCTTGGCTGCAACCAAGGATCTTCTTT ATACAGGTTCTGATAGCAAGAACATTCGTGTGTGGAAGAACTTGAAGGAGTTCTCTGGATTCAAATCGAGCAGTGGTTTGGTGAAAGCCATAATAATTGC TGGTGAGAAGATTTTCACCGGTCACCAGGATGGCAAGATACGAGTATGGAAGGTTATCCCAAAGAATCCAACAATACACAAGAGATCAGGAACATTGCCT ACATTAAAGGAAATACTCAAGAGCTCTATCAGACCAAGCGCATACGTCCAAGTTCGAAACCGTTCTGCTCTTTGGATCAAGCATTGTGATGCCATTTCAT GTTTGACCCTCAGCGAGGACAAAACCCTTTTGTATTCCGCTTCCTGGGACCGGACTTTCAAGGTATGGAGAATCTCAGACTCTAGATGTCTTGAATCAAT CAATGCCCACGATGATGCTGTTAATTCTGTCGTGGCGAGTCTAGAAGGCTTGGTGTTCACAGGCTCAGCTGATGGAACGGTGAAGGTGTGGAAACGAGAG CAACAAGGCAAAACGACAAAGCATTCTCCTGTTCAAACATTGTTGAAACAAGAGAGTGCGGTTACATCATTGGCCGTGAACACCTCTGGTTCGGTTGTGT ACTGTGGGTCCAGTGATGGAATGGTGAATTATTGGGAATGCGAGAAGCAGTTATCCCACGGTGGGGTACTTAAGGGCCACAAACTTGCTGTTCTGTGCCT CGCAGCCGCGGGGAATCTGGTCTTTAGTGGATCAGCTGACAAGACCATATGCGTGTGGAGAAGGGATGGCAAGCTTCATGCATGCATATCTGTGCTGACA GGGCATACTGGACCTGTGAAGTGCCTGGCGGTGGAGGTGGATCATGAGAAATCCAAAGACGGTGATCAACGGTGGGTTGTGTACAGCGGGAGTCTGGACA AGTCTGTGAAGGTTTGGAGTGTGGCTGAGATGGCACCTGATTTGTATCAAATGGCCATGATGCAACAGCAGCAGCAATATCAGCAACATATTGGTTCTGA TGCAGATTCATTGCAATCTGATGAAAGCAGCAGAGCTGGTAAGAACAGGGGGAAGTAA
AA sequence Show only first row Show all	>Potri.002G130400.1 pacid=42780224 polypeptide=Potri.002G130400.1.p locus=Potri.002G130400 ID=Potri.002G130400.1.v4.1 annot-version=v4.1 MMNGGRGGIGSRMGDEEEIGTKFVDTGNHTPRSKFGNMMHSDPNLSATAAAIPRDEVFGYRNSSASLTGPASFDPNRMSCEGSPMTMSPWNQTGGGSNFP WSFEENLPQNGLIGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNLKEFSGFKSSSGLVKAIIIAGEKIFTGHQDGKIRVWKVIPKNPTIHKRSGTLP TLKEILKSSIRPSAYVQVRNRSALWIKHCDAISCLTLSEDKTLLYSASWDRTFKVWRISDSRCLESINAHDDAVNSVVASLEGLVFTGSADGTVKVWKRE QQGKTTKHSPVQTLLKQESAVTSLAVNTSGSVVYCGSSDGMVNYWECEKQLSHGGVLKGHKLAVLCLAAAGNLVFSGSADKTICVWRRDGKLHACISVLT GHTGPVKCLAVEVDHEKSKDGDQRWVVYSGSLDKSVKVWSVAEMAPDLYQMAMMQQQQQYQQHIGSDADSLQSDESSRAGKNRGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26490			Transducin/WD40 repeat-like su...		Potri.002G130400 [exp]	0	1
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	8.48	0.8313
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G441801 [exp]	11.22	0.7675
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G051300 [exp]	14.07	0.7597
AT1G67410			Exostosin family protein (.1)		Potri.010G227901 [exp]	15.16	0.7920
AT5G25630			Tetratricopeptide repeat (TPR)...		Potri.006G242600 [exp]	23.23	0.7831
AT1G67340			HCP-like superfamily protein w...		Potri.003G171400 [exp]	25.49	0.6803
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060126 [exp]	26.07	0.7962
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.011G023401 [exp]	29.24	0.7838
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.014G041532 [exp]	32.68	0.7023
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.002G041500 [exp]	33.36	0.7867	Pt-BET11.2

Compare expression of checked genes

Potri.002G130400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.