Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23450 605 / 0 Protein kinase superfamily protein (.1.2) AT5G66790 475 / 4e-160 Protein kinase superfamily protein (.1) AT3G53840 270 / 4e-81 Protein kinase superfamily protein (.1) AT1G18390 262 / 4e-78 Protein kinase superfamily protein (.1.2) AT1G25390 262 / 4e-78 Protein kinase superfamily protein (.1) AT5G02070 259 / 5e-77 Protein kinase family protein (.1) AT5G38210 244 / 7e-71 Protein kinase family protein (.1) AT1G79680 241 / 4e-69 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G69730 241 / 4e-69 Wall-associated kinase family protein (.1) AT1G66880 246 / 5e-69 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038600 [exp] 1080 / 0 AT2G23450 620 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G130900 [exp] 639 / 0 AT2G23450 773 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G034500 [exp] 626 / 0 AT2G23450 731 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 271 / 2e-81 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) Potri.006G118500 [exp] 270 / 4e-81 AT5G02070 577 / 0.0 Protein kinase family protein (.1) Potri.017G118100 [exp] 270 / 2e-80 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 269 / 2e-80 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.004G097100 [exp] 267 / 7e-80 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.004G096900 [exp] 267 / 2e-79 AT5G38210 557 / 0.0 Protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032741 [exp] 693 / 0 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 596 / 0 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 511 / 2e-173 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011652 [exp] 348 / 2e-115 AT2G23450 337 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 271 / 5e-81 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 270 / 2e-80 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 266 / 7e-80 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10029132 [exp] 252 / 2e-74 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 233 / 3e-67 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10034445 [exp] 227 / 3e-63 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G130600.2 pacid=42778920 polypeptide=Potri.002G130600.2.p locus=Potri.002G130600 ID=Potri.002G130600.2.v4.1 annot-version=v4.1 ATGATCCTTCAACAACACACTATCCTCTTCTTAGCAATCTTTGCTATTTCATTAATCGAAGCTCATGCTTCCATCAAGTTCAGATGCAACAGAACATGCG GCACCAACCATCTTCCATACCCTTTTGGATTCTCTGCCGATTGTGATATCCATTTAAATTGTAGCCCACATGGTGAAATGCTTATCAATGAGTTTCCAGT CCAGATTGTAGGCCAAAATTCAATAAAGATCATTCTTGAACCCAAATGTAACCGTCCTCTCGAAGCCCTCGACAATCTTTTTACCAAAAACTATGCTCCA AAATCAACAAACGCAATTCTTTTACACAACTGTACCTCTGCAGTTTCGCCATGCAATATACCTTCTATAAACGTGCAGACTCATTTCGAGTCACTTAAAT GTTCAAATAACAGCAGCTTAAGTTGTTTCTCTAAGGAGGTTACAGCAAACGGTTTCTTTGATTATAACATGGCCAATATTAGCCAGTGCCAGTATTTTTT GTCATCAATATCGGCAGAGTCTTTCACTGGTTCTGGTGTTTCCTTAGAGATTCAGATGATGGAGCTATGGTGGTGGCTTCAAGGGGACTGCCGTTGCTCT AAGGATGCCATTTGTACTCAAGTTGAATCGCCTGCAGGGTCAGGATTTCGGTGCCAGTGCAGAGACGGGCTAATTGGTGATGGATATCTTGCCGGGGTTG GCTGCCGGAAAGCCTCTGCAGGTTGCAATCCTGCAAAGTATTTGTCTGGCCAATGTGGAGGAGGGTCTGGAGCTGCTGTTTTACTTGGAGGCGTTGTAGC TGGAGTAGGGGTCAGTCTGGGTCTATTTTGCTGTCTCGTACGGAGGAATTCCGCGTCAAAAGCCAAAAGCTTCAGAAAACTCCACCTATCTGAAGCTGCA GACATCAACATTCCCATCTATCCCTACAAAGAAATAGAGAAGGCCACAAATAGTTTCTCTGAGAAACAAAGGATTGGAACTGGGGCTTATGGAACTGTCT ATGCTGGTAAACTCAACAGTGATTCATGGGTTGCCATTAAGAGGATCAAACATGGAGATATGGACAACATTGAGCAAGTGATGAACGAAATCAAGCTCAT TTCTTCTGTGAGTCACCCGAATTTAGTCCGCCTCTTAGGTTGCTCCATAGAAAATGGTGAGCAAATTCTTGTCTATGAATTCATGCCGAATGGGACATTG TGCCAGCATTTACAAAGAGAGAGAGGTGATGGACTTGACTGGCCTGTTCGCCTCGCTATTGCTGCGGATACTGCTAAAGCTATAGCCCATCTCCACTCTG CTATGGATCCCCCGATATATCATAGAGATATCAAGTCGAGCAACATACTCTTAGACTACCACTTCAGGTCCAAAGTTGCAGATTTTGGTCTTTCCAGACA TGGCATGACTGAAATATCACACATCTCTACTGTCCCGCAAGGAACTCCAGGCTACCTTGATCCTCAGTACCATCTAAACTTCCATCTTTCGGACAAAAGT GACGTTTATAGCTTTGGTGTTGTTCTCGTTGAGATCATAACAGCAAAGAAGGTGGTGGACTTTTCCAGGCCTCAGAATGAAGTGAATTTGGCTGCTCTTG CCACTGATAGGATTGGCAGGGGGAGATTGGATGAGATAATCGATCCGTTCCTTGATTTACATAGTGATGCTTGGACCTTTTCTTCAGTGCATAAAGTGGC AGAAGTGGCATTTAGGTGCCTTGCATTTCATAAAGACATGAGGCCTTCAATGATGGAAGTTGCAGCAGAACTAGAGCAAATACTGCTTAGTAGATGGGCT TCTTCAGAGGAAACAAATTGCGCAATCTCATTAGATTTTTCCCCTTGCTCTTCTTCATCTAATGTCAGCGACAAGCCTCTAAACTCCACAGTAAAAAAAA CAGAAATAGAGAGAAGAGGTTTGTTTGTGCTGCAGACACAGACCAGTAAAAAGTCAACGGAAAGGGCCAATCATAATTCACCTGTTTCTGTCCAAGATCC ATGGTTAAGTGAAAAAAGCTCACCTTCTTCAAGCAATTTGCTAAATAACGTTATAGTTAAGTGA
AA sequence Show only first row Show all	>Potri.002G130600.2 pacid=42778920 polypeptide=Potri.002G130600.2.p locus=Potri.002G130600 ID=Potri.002G130600.2.v4.1 annot-version=v4.1 MILQQHTILFLAIFAISLIEAHASIKFRCNRTCGTNHLPYPFGFSADCDIHLNCSPHGEMLINEFPVQIVGQNSIKIILEPKCNRPLEALDNLFTKNYAP KSTNAILLHNCTSAVSPCNIPSINVQTHFESLKCSNNSSLSCFSKEVTANGFFDYNMANISQCQYFLSSISAESFTGSGVSLEIQMMELWWWLQGDCRCS KDAICTQVESPAGSGFRCQCRDGLIGDGYLAGVGCRKASAGCNPAKYLSGQCGGGSGAAVLLGGVVAGVGVSLGLFCCLVRRNSASKAKSFRKLHLSEAA DINIPIYPYKEIEKATNSFSEKQRIGTGAYGTVYAGKLNSDSWVAIKRIKHGDMDNIEQVMNEIKLISSVSHPNLVRLLGCSIENGEQILVYEFMPNGTL CQHLQRERGDGLDWPVRLAIAADTAKAIAHLHSAMDPPIYHRDIKSSNILLDYHFRSKVADFGLSRHGMTEISHISTVPQGTPGYLDPQYHLNFHLSDKS DVYSFGVVLVEIITAKKVVDFSRPQNEVNLAALATDRIGRGRLDEIIDPFLDLHSDAWTFSSVHKVAEVAFRCLAFHKDMRPSMMEVAAELEQILLSRWA SSEETNCAISLDFSPCSSSSNVSDKPLNSTVKKTEIERRGLFVLQTQTSKKSTERANHNSPVSVQDPWLSEKSSPSSSNLLNNVIVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23450			Protein kinase superfamily pro...		Potri.002G130600 [exp]	0	1
AT1G14890			Plant invertase/pectin methyle...		Potri.010G109300 [exp]	1.00	0.9212
AT1G12380			unknown protein		Potri.015G130800 [exp]	1.73	0.9094
AT3G55060			unknown protein		Potri.010G214300 [exp]	3.00	0.9010
AT1G28400			unknown protein		Potri.004G048301 [exp]	3.46	0.9097
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.002G179100 [exp]	9.21	0.8516
AT3G18170			Glycosyltransferase family 61 ...		Potri.012G051500 [exp]	10.48	0.8955
AT1G28400			unknown protein		Potri.011G057500 [exp]	10.58	0.9070
AT1G32860			Glycosyl hydrolase superfamily...		Potri.001G449100 [exp]	14.14	0.9013
AT1G80690			PPPDE putative thiol peptidase...		Potri.001G047800 [exp]	14.66	0.9044
AT4G24780			Pectin lyase-like superfamily ...		Potri.012G091500 [exp]	23.97	0.8821

Compare expression of checked genes

Potri.002G130600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.