Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AOS.7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42650 693 / 0 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT4G15440 273 / 8e-87 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT5G04630 49 / 5e-06 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT1G64930 47 / 3e-05 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G13150 46 / 6e-05 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1) AT3G10560 45 / 9e-05 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT3G20935 44 / 0.0003 CYP705A29P, CYP705A28 "cytochrome P450, family 705, subfamily A, polypeptide 28", cytochrome P450, family 705, subfamily A, polypeptide 28 (.1) AT5G04660 43 / 0.0005 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) AT3G20940 43 / 0.0006 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT3G10570 42 / 0.0009 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038700 [exp] 912 / 0 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 549 / 0 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 541 / 0 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 531 / 0 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 474 / 1e-164 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G155800 [exp] 374 / 7e-125 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.001G003100 [exp] 50 / 3e-06 AT5G36110 424 / 2e-145 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.019G078600 [exp] 48 / 1e-05 AT5G36110 476 / 2e-165 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G002800 [exp] 47 / 3e-05 AT5G36110 415 / 1e-141 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018791 [exp] 668 / 0 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10032739 [exp] 548 / 0 AT5G42650 496 / 8e-173 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021015 [exp] 487 / 5e-169 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021019 [exp] 462 / 4e-159 AT5G42650 474 / 6e-164 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10031540 [exp] 362 / 6e-120 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10030029 [exp] 360 / 3e-119 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 334 / 2e-109 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 333 / 9e-109 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 330 / 1e-107 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 327 / 2e-106 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.002G130700.1 pacid=42777141 polypeptide=Potri.002G130700.1.p locus=Potri.002G130700 ID=Potri.002G130700.1.v4.1 annot-version=v4.1 ATGGCTTCCTCTTCCTTAGCTTTCCCTTCCCTTCAAACCCAATTCCAGTCACTAAAAAAGCCGTCTAGTCCCAAGCCCTCCACTCGTCGCTTCTCTGTCC GTCCGATCAGAGCATCAATATCAGAAAAACCATCAGTTCCAGGTCCACCCGCTACTGTTTCACCATCTGAACCAACCAAACTCCCCATCCGCAAAATCCC TGGTGATCATGGGCTCCCTCTTATTGGTCCCTTTAAAGATCGCATGGATTATTTCTATAACCAAGGCAGAGACGAGTATTTCAAATCCAAAATTCAAAAA TACCAATCAACGGTGTTTAGAGCTAACATGCCGCCCGGTCCTTTTATTGCTCCAAATCCGCACGTCGTGGTTTTACTTGACGGAAAAAGCTTTCCGGTTC TATTTGACGTGACAAAAGTTGAAAAGAAAGATCTTTTTACAGGTACTTTCATGCCTTCAACAGAACTCACTGGTGGCTACCGAGTTCTGTCCTATCTTGA CCCGTCCGAACCAAAACACGCCAAACTGAAACAACTCATGTTCTATCTCCTCAAGTCACGCCGTGATCACGTAATCCCTGAATTCAATGCCAGTTACACA GAACTCTTTATGAGTCTTGAAAAAAACTTGGCTCTCGGAGGGAAAGCTAGTTTCGGTGAAGCTAATGATCAAGCAGCTTTTAATTTCTTGGCTAGGTCTT GGTTTGGTACTGATCCGGCAGAGACCACACTTGGCCTTGACGGACCCGGTCTAGTTTCAAAATGGGTGCTCTTTAACCTTGGTCCAGTGCTCAAACTCGG TCTTCCAAAATATCTTGAAGATCTTACCGTCCATTCATTCCGTCTACCACCATCACTAATTAAAAAAAGCTACCAGCGTCTTTACGATTTCTTCTACGCT TCGTCAGGCTTCCTGCTCGACGAAGCAGAAAATTTAGGAATTTCACGTGAGGAGGCATGTCATAATCTTCTTTTCACCACATGCTTTAATTCATTCGGTG GGATGAGGATTTTATTTCCAAACATGATGAAATGGCTAGGCCGTGCCGGGACCAAACTCCACGCTCGATTAGCCGAAGAGATCAGATCAGTGGTCAGATC CAACGATGGAAGTATTACAATGCGGGGCATGGAAGAGATGCCATTGATGAAATCAGTAGTCTATGAAGCACTCCGAATTGAACCACCAGTCTCGCTACAG TTCGGTAGAGCAAAGCGTGATCTGATAATTGAAAGCCACGACGCTGCTTTTGAAGTCAAAGAAGGGGAGATGTTATTCGGGTTCCAACCATTCGCTACCA AAGACCCGAAAATATTTACCCAAGCCGAGGAGTTTGTCGCTGACAGGTTTATTGGGGAGGGAGAGAAGATGTTGGAGCACGTGCTGTGGTCTAACGGGCC AGAGACAGAGAAGCCGACGTTGGGAAATAAACAGTGTGCAGGGAAAGATTTTGTGGTACTCGTGTCTAGGCTGTTTGTGGTGGAGTTGTTCTTAAGGTAC GATTCATTCGAGATAGAGGTTGGAACGTCGCCCTTGGGAGCAGCTGTGACGGTTACTTCATTGAAAAGGGCAAGTTTTTAG
AA sequence Show only first row Show all	>Potri.002G130700.1 pacid=42777141 polypeptide=Potri.002G130700.1.p locus=Potri.002G130700 ID=Potri.002G130700.1.v4.1 annot-version=v4.1 MASSSLAFPSLQTQFQSLKKPSSPKPSTRRFSVRPIRASISEKPSVPGPPATVSPSEPTKLPIRKIPGDHGLPLIGPFKDRMDYFYNQGRDEYFKSKIQK YQSTVFRANMPPGPFIAPNPHVVVLLDGKSFPVLFDVTKVEKKDLFTGTFMPSTELTGGYRVLSYLDPSEPKHAKLKQLMFYLLKSRRDHVIPEFNASYT ELFMSLEKNLALGGKASFGEANDQAAFNFLARSWFGTDPAETTLGLDGPGLVSKWVLFNLGPVLKLGLPKYLEDLTVHSFRLPPSLIKKSYQRLYDFFYA SSGFLLDEAENLGISREEACHNLLFTTCFNSFGGMRILFPNMMKWLGRAGTKLHARLAEEIRSVVRSNDGSITMRGMEEMPLMKSVVYEALRIEPPVSLQ FGRAKRDLIIESHDAAFEVKEGEMLFGFQPFATKDPKIFTQAEEFVADRFIGEGEKMLEHVLWSNGPETEKPTLGNKQCAGKDFVVLVSRLFVVELFLRY DSFEIEVGTSPLGAAVTVTSLKRASF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.002G130700 [exp]	0	1	AOS.7
AT4G21865			unknown protein		Potri.008G172000 [exp]	1.41	0.9667
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Potri.006G139400 [exp]	3.16	0.9549
AT1G72450	ZIM	TIFY11B, JAZ6	TIFY DOMAIN PROTEIN 11B, jasmo...		Potri.003G068900 [exp]	3.87	0.9604
AT1G07710			Ankyrin repeat family protein ...		Potri.016G080700 [exp]	4.47	0.9498
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226500 [exp]	4.47	0.9561
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Potri.002G172101 [exp]	4.79	0.9374
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	5.29	0.9607	WRKY40.2
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Potri.007G044800 [exp]	5.74	0.9498
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226400 [exp]	6.00	0.9516
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Potri.001G142200 [exp]	6.24	0.9442	ATMYC2.2

Compare expression of checked genes

Potri.002G130700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.