Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47578 361 / 3e-126 Biotin/lipoate A/B protein ligase family (.1) AT4G31050 360 / 5e-126 Biotin/lipoate A/B protein ligase family (.1) AT1G04640 124 / 3e-34 LIP2 lipoyltransferase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G014000 [exp] 126 / 7e-35 AT1G04640 388 / 2e-138 lipoyltransferase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025664 [exp] 353 / 2e-122 AT4G31050 346 / 8e-120 Biotin/lipoate A/B protein ligase family (.1) Lus10031225 [exp] 132 / 2e-37 AT1G04640 358 / 1e-126 lipoyltransferase 2 (.1.2) Lus10031801 [exp] 128 / 2e-35 AT1G04640 355 / 2e-125 lipoyltransferase 2 (.1.2) Lus10008181 [exp] 108 / 3e-28 AT4G31050 107 / 1e-28 Biotin/lipoate A/B protein ligase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF03099 [poplar] [flax] BPL_LplA_LipB Biotin/lipoate A/B protein ligase family
Representative CDS sequence Show only first row Show all	>Potri.002G131000.1 pacid=42778952 polypeptide=Potri.002G131000.1.p locus=Potri.002G131000 ID=Potri.002G131000.1.v4.1 annot-version=v4.1 ATGATCATCCAGGCAACAACAACTTCAAATTTTGGTTCATTCCCAATATGCCCAACAACCAGGCACCATTCTCAATCCCGCAAAATCATCCCTTTGAATC TTGTTTCGTCTCAAAAAGGCCAAGAGTTTACCTCAGTAACTCACAAAGGTGACAAAATGTGCGAGTGTTTTGATTTGCATAAAGAGCTAGTCCCATATGG AGATGCTTGGAATTGGCAGAAAGTGATTGTTAGAGAGAAAAGCTGGTTGATTGAAAGGAATGAAGAATGCCCAGATACACTGATTGTTTTGCAGCATCAA CCTGTGTATACAATGGGTACTGGTAGCTCTATAGAATACCTGAATTTTGACATAAAGAATGCTCCTTTTGAGGTTTATCGTACTGAACGAGGTGGAGAAG TTACCTATCACGGGCCTGGCCAGCTAACTATGTACCCAATTATCAATCTTCGAAATCACAAGATGGATCTTCATTGGTACCTCAGGGAACTTGAGGAGGT GGTCATTCGTGTTCTTTCCTCAACATTTTCTATCAAGGCTTCCAGGATTGAGGGTTTAACTGGAGTTTGGGTTGGAGATCAGAAACTGGCTGCAATTGGT ATAAAAGTATCTCAATGGATAGCATATCATGGTTTAGCACTGAATGTCACTACAGATTTGGCACCTTTTAATTTGATAGTTCCATGTGGGATCAGGAACC GGAAGGTTGGAAGCATAAAGGGGTTACTGGAAGAATCCTGCTCAAATGCAAAGGCACATCATTTTGATTATTCACAACTGATTGATATTACTAGCCAATC CTTGATCAGGGAGTTTTCAGAAGTTTTTCAGCTTAAGATCCAACAAAGAAGTTTGGAGTTTTTGGTGAAGAAACCAGAAAGCTTATAA
AA sequence Show only first row Show all	>Potri.002G131000.1 pacid=42778952 polypeptide=Potri.002G131000.1.p locus=Potri.002G131000 ID=Potri.002G131000.1.v4.1 annot-version=v4.1 MIIQATTTSNFGSFPICPTTRHHSQSRKIIPLNLVSSQKGQEFTSVTHKGDKMCECFDLHKELVPYGDAWNWQKVIVREKSWLIERNEECPDTLIVLQHQ PVYTMGTGSSIEYLNFDIKNAPFEVYRTERGGEVTYHGPGQLTMYPIINLRNHKMDLHWYLRELEEVVIRVLSSTFSIKASRIEGLTGVWVGDQKLAAIG IKVSQWIAYHGLALNVTTDLAPFNLIVPCGIRNRKVGSIKGLLEESCSNAKAHHFDYSQLIDITSQSLIREFSEVFQLKIQQRSLEFLVKKPESL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47578			Biotin/lipoate A/B protein lig...		Potri.002G131000 [exp]	0	1
AT2G17030			F-box family protein with a do...		Potri.001G277400 [exp]	3.74	0.7942
AT1G52190			Major facilitator superfamily ...		Potri.018G041800 [exp]	6.63	0.7677
					Potri.011G046112 [exp]	9.00	0.8046
AT3G21690			MATE efflux family protein (.1...		Potri.011G002500 [exp]	12.16	0.7887
AT1G19360		RRA3	reduced residual arabinose 3, ...		Potri.002G134400 [exp]	19.67	0.7067
AT1G78560			Sodium Bile acid symporter fam...		Potri.011G103200 [exp]	20.00	0.7300
					Potri.001G215166 [exp]	22.95	0.7416
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Potri.001G250300 [exp]	23.45	0.6990
					Potri.006G019550 [exp]	24.49	0.6925
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Potri.002G229325 [exp]	25.33	0.7901

Compare expression of checked genes

Potri.002G131000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.