Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65430 572 / 0 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) AT2G31510 556 / 0 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT1G05890 541 / 0 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31770 477 / 1e-163 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT2G31760 473 / 2e-162 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT2G31780 406 / 3e-137 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT1G05880 275 / 8e-86 ATARI12, ARI12 ARABIDOPSIS ARIADNE 12, ARIADNE 12, RING/U-box superfamily protein (.1.2) AT5G08730 216 / 2e-63 ATARI16, ARI16 ARABIDOPSIS ARIADNE 16, ARIADNE 16, IBR domain-containing protein (.1) AT5G63750 214 / 2e-62 ATARI13, ARI13 ARABIDOPSIS ARIADNE 13, ARIADNE 13, RING/U-box superfamily protein (.1) AT4G34370 211 / 7e-61 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G180600 [exp] 589 / 0 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.017G032000 [exp] 588 / 0 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.007G126900 [exp] 585 / 0 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.008G077100 [exp] 581 / 0 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131300 [exp] 491 / 3e-168 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.T124304 [exp] 201 / 6e-57 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 201 / 6e-57 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.001G037200 [exp] 70 / 6e-13 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.009G150100 [exp] 69 / 4e-12 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026856 [exp] 582 / 0 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10027027 [exp] 550 / 0 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10025566 [exp] 550 / 0 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10013371 [exp] 385 / 3e-128 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10020229 [exp] 385 / 3e-126 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10040508 [exp] 201 / 7e-57 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10042348 [exp] 200 / 2e-56 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10011309 [exp] 199 / 6e-56 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10000131 [exp] 177 / 4e-52 AT2G31760 182 / 7e-55 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) Lus10026319 [exp] 186 / 2e-51 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Potri.002G131200.1 pacid=42779841 polypeptide=Potri.002G131200.1.p locus=Potri.002G131200 ID=Potri.002G131200.1.v4.1 annot-version=v4.1 ATGGACGACATCCACCCTTCAAGCGACAGCATCAAGGTGGAGTCAAAAATCAATTACTACAGTGATGGGTTCGATGATAACGAGGATCCGTTTTTCTTAT CTGATGATGATCTTGTTGGTGGTGATGATGGTGCTGCTGATGCCCTTTTGGAGGATATAAGAGAGGATGAAATTGACCTCCTCAAGCAGAAGCAACAGGA CTGCAAAATCCTGAACGCAACAGAGCTTCGTCAACGCATGGAGCATGATGTCGCCCAAGTCTCTGCCGTCCTCTCTGTATCCAAAACTGAGGCAAGTATC TTACTCCGTAATTATAACTGGTCTGTTGGTAAAGTCAATGATGCATGGTTTACTGATGAGTCTGCAGTCCGTGAAAAAGTCGGGTTGTTCGTGAAACCTC TGATAAGTTCTGATATTGTCTCCAATAAGAGGAAAATTATCATTTGTGGGATTTGTTTTGAATCCCACACCAGTGATAGAATCATATATGCTGACTGTGG GCATCTTTATTGTGAAATTTGTTGGTCTATCTATATTAGCACATCAATTAACAATGATGGCGCTGGGTGTTTGATGTTGAGGTGTCCTGAGCCCTCTTGT CATGCTGCTATCGGTCAAGACATGATCGATTCATTAACATCTGAAGAAGATAGGAAGAAGTATTCTGATTTCCTTCTTAGATCTTATGTTGAAGATAATA GGACGACAAAGTGGTGTCCTGGCCCAGCCTGTGAGTATGCTATTGAATTTTCTGGTGCTGATGGAATATTTGATGTCACTTGCCATTGTTTTACTAGTTT TTGCTGGAATTGCAAGGAGGAATGCCACCGTCCAATGGACTGTGACACTGTGAAAAGGTGGATTTTGAAGAACAGCTCAGAATCGGAAAATGTAAATTAT ATACTAGCTTATTGCAAGCCCTGTCCCAATTGCAAGAGACCAATTGAAAAAAATCATGGGTGTATGCACATGACATGCAGGGTTTGCCGCTACGAATTTT GTTGGTTATGTTTGGGTCCATGGAAAGGCCATATGAATTGCAACCGATACATGGAAAGAACTGATACAGATGACAAGAGGAAAAAATTGGCAAAGGAATC TTTAGAGAAATATACTCATTATTTTGAACGTTGGGATGCCAATCGAAAATCGAAGGTGAAGGCACTTGCAGATCATCAAAGAGTGAAAGATGAAGAGTTC AAGAAGCTGAGTGTGTCACAAGACATACCAGAGGCCCATTTCGAGTTCATATCAAAGGCGTGGCTACAGGTAGTTGAATGTAGGCGAGCACTGGAATGGA GTTATTCATATGGATACTACCTGCCTGACAGCGAGCCTGCTAAAAAACAGTTTTTTGAGTACTTGCAAGGGGAGGCAGAGTCGACCCTGGAAAAGCTTCA TAATTGCGTGGAGAGCGAGCTGAAGGAGTTTCTTGATGTTGATGGCCTATCAAAGAAATTCAGCGAATTCCGAACAAAGCTGGTTGGACTGACCACTGTG ACAGGGAATTACTTCGAGAAGCTTGTTAGAGCATTGGAGAATGGCCTATCTGATGTGAACTCCCACGGGACCAAGGGCTTAGAGGATGAAGCTGAAGATT CTTGGCATTGTGATCGCTGTACCTACGCTAATCCCTCCTCCATCAGAAGTTGCAAGATGTGTGTTCCATCTGATATAGATAATGTTAGTGGTAATGAATG A
AA sequence Show only first row Show all	>Potri.002G131200.1 pacid=42779841 polypeptide=Potri.002G131200.1.p locus=Potri.002G131200 ID=Potri.002G131200.1.v4.1 annot-version=v4.1 MDDIHPSSDSIKVESKINYYSDGFDDNEDPFFLSDDDLVGGDDGAADALLEDIREDEIDLLKQKQQDCKILNATELRQRMEHDVAQVSAVLSVSKTEASI LLRNYNWSVGKVNDAWFTDESAVREKVGLFVKPLISSDIVSNKRKIIICGICFESHTSDRIIYADCGHLYCEICWSIYISTSINNDGAGCLMLRCPEPSC HAAIGQDMIDSLTSEEDRKKYSDFLLRSYVEDNRTTKWCPGPACEYAIEFSGADGIFDVTCHCFTSFCWNCKEECHRPMDCDTVKRWILKNSSESENVNY ILAYCKPCPNCKRPIEKNHGCMHMTCRVCRYEFCWLCLGPWKGHMNCNRYMERTDTDDKRKKLAKESLEKYTHYFERWDANRKSKVKALADHQRVKDEEF KKLSVSQDIPEAHFEFISKAWLQVVECRRALEWSYSYGYYLPDSEPAKKQFFEYLQGEAESTLEKLHNCVESELKEFLDVDGLSKKFSEFRTKLVGLTTV TGNYFEKLVRALENGLSDVNSHGTKGLEDEAEDSWHCDRCTYANPSSIRSCKMCVPSDIDNVSGNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131200 [exp]	0	1
AT5G03970			F-box associated ubiquitinatio...		Potri.019G013900 [exp]	3.46	0.7847
AT1G29160	DOF	AtDof1. 5	Dof-type zinc finger DNA-bindi...		Potri.004G056900 [exp]	3.87	0.8296	Pt-DOF2.2
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Potri.002G224800 [exp]	4.47	0.7640	Pt-SMT3.1
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.008G136100 [exp]	5.09	0.8021	RDR902,Pt-RDRP.1
AT5G12200		PYD2	pyrimidine 2 (.1)		Potri.001G273400 [exp]	6.48	0.8015
AT1G27170			transmembrane receptors;ATP bi...		Potri.005G004233 [exp]	6.70	0.7708
AT3G07870			F-box and associated interacti...		Potri.014G162600 [exp]	10.19	0.7925
AT5G40460			unknown protein		Potri.008G187300 [exp]	12.96	0.7828
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.004G089500 [exp]	17.54	0.7736
AT5G61530			small G protein family protein...		Potri.004G233400 [exp]	20.49	0.7776

Compare expression of checked genes

Potri.002G131200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.