Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65430 538 / 0 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) AT2G31510 529 / 0 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT1G05890 524 / 0 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31770 494 / 1e-169 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT2G31760 482 / 1e-165 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT2G31780 406 / 6e-137 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT1G05880 270 / 1e-83 ATARI12, ARI12 ARABIDOPSIS ARIADNE 12, ARIADNE 12, RING/U-box superfamily protein (.1.2) AT4G34370 182 / 1e-49 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT5G63750 177 / 2e-48 ATARI13, ARI13 ARABIDOPSIS ARIADNE 13, ARIADNE 13, RING/U-box superfamily protein (.1) AT2G16090 175 / 2e-47 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G032000 [exp] 557 / 0 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.007G126900 [exp] 554 / 0 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.008G077100 [exp] 550 / 0 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.010G180600 [exp] 550 / 0 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131200 [exp] 490 / 5e-168 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.T124304 [exp] 183 / 5e-50 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 183 / 5e-50 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.017G050100 [exp] 63 / 5e-10 AT4G01020 1719 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.001G214201 [exp] 56 / 2e-09 AT1G65430 66 / 9e-14 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026856 [exp] 550 / 0 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10025566 [exp] 528 / 0 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 528 / 0 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10020229 [exp] 497 / 4e-169 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10013371 [exp] 372 / 2e-122 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10000131 [exp] 207 / 3e-63 AT2G31760 182 / 7e-55 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) Lus10011309 [exp] 198 / 3e-55 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10040508 [exp] 196 / 1e-54 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10042348 [exp] 191 / 8e-53 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10026319 [exp] 174 / 7e-47 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Potri.002G131300.1 pacid=42779851 polypeptide=Potri.002G131300.1.p locus=Potri.002G131300 ID=Potri.002G131300.1.v4.1 annot-version=v4.1 ATGGCTGACATGAACGATTTTGATGATTTCGATGACTACTCACCCACAGATTACTCCAGTGATGACAATACTGACTCCAGTGAAACAAACTTTACCGTCT TGAAAGAGGCCGATATTTGCCGATGTATCGAGCATGAGATCACAGAGTTATCTGATGTACTCTCAATATCGAAACTCGAGGCAAGTCTTCTACTTCGTCA CTACAATTGGAATGTTTGTAAAGTACATGATGCGTGGTTTGTTGACGAATTCGGAGTCCGTAAAAAGGTAGGCTTGTTGCTGGAGAAGCCGGAAGAAAAA CAAGTCAGTTATGATGATCTGACTTGTGGGATTTGTTTTGAATCTTATAGTCAAGATTTCATTAAATCTGTCACTTGTGGTCATCCTTTTTGTTCTGAAT GCTGGGGACTTTACATTCACACGAACATCAATGATGGTCCTGGATGTTTGGTTCTAAGGTGTCCTGAACCAACATGTGCTGCTGCTGTTGGTGATGATGT TATTAACGAATTGGGGTTCGAGGAAGATAGGAAAAAGTACTATCGTTACCTTGCTAGGTCTTATGTAGAAAGCAACAAGAGGAGAAAGTGGTGTCCTGCT CCAGGTTGTGATTATGCTATTGATTTTGTCGGCTGCGATGGAGACTTTGATGTTACTTGCGTGTGCTCTCATTCCTTTTGCTTTAATTGTTGTGAGGAAA GACATCGACCAGTAGGATGTGATACTGTGAAAAAATGGAATTTGAAAAACAGTTCAGACTCTCAAACTGAGACGTGGAAGAAAGCTTATACCAAGCCTTG TCCCGAGTGCCAGAGACCGATTGAGAAGAATGCGGGATGTATGCGCATGTCATGCACAACTCCTTGTTATCATATGTTTTGCTGGATATGCCTTAAAGAC TGGTCTGTTCATGGTTATGGTGGTTCTTGCAATAGGTATGTTGGAAATCCTCAGCCTGAGGAAACTAGTCCATTGCGGCAAGAGTTGCTTAAATACCAAC ATTATTATGATCGCTGGGCAGCCAATGAAAAGTCGAGGCAAATTGCTTTGACAGACTTGGGAAAGGTGCGGAACAATCATCTAAAGGAGATCTCGAAACT CTATGGCCAACCTGAGACTCAGCTTGAATTCTTGACCGAGGCCTGGCAGCAGATAGTTGAATGTCGACGGGTGCTGAAATGGACCTATGCATACGGGTAT TACCTAGCGGAGGATGACGATGCTAAGGCAAAATTATTCGTGTACTTGCAAGGGCAGGCGGAATCCAGTTTAGAAAGGTTTCATGATTGTGCAGAGAGGG AACTTAAGATATTTATTGATCCTGATGAACTTTCTGACAGTTTCAATGACTTTCGGTTGAAGTTAATCCATCTGACAGGAGTGACCAAAAATTACTTTAA GAATTTGGTTACAGCATTAGAGAATGGACTATCAGACGTGGCTAGCTCCTCGAAGCAACAAAAAACCTCGATCTGCAGAAGACTAAAAGTTCCAGCAGGC GAGACCTGCAACAGAATGACAACTCCTGAAGACAGGCCCTCGAATCTCTACACAGCTATAACAAGGACTTATGCAAATCCAAACAAGACAAAAGCACCCA AAAAAACAATGGGTGCTGCACTTGAGATTACAACTCAAACAAAGAGGAGAACTGCTGACAATTTGACACCTCAGGGTGAATGGTCTTGTGTGTTTTGTTC TTACATGAATCCGGGTTCAGCAGAGACATGCGAGGCATGTAATCGAGGAGCTTGGACTTGTCAGCACTGCACATATGCCAATCCCAGGACCGCAACCACA TGCCAGATGTGCGCTGAAACCCAGTGA
AA sequence Show only first row Show all	>Potri.002G131300.1 pacid=42779851 polypeptide=Potri.002G131300.1.p locus=Potri.002G131300 ID=Potri.002G131300.1.v4.1 annot-version=v4.1 MADMNDFDDFDDYSPTDYSSDDNTDSSETNFTVLKEADICRCIEHEITELSDVLSISKLEASLLLRHYNWNVCKVHDAWFVDEFGVRKKVGLLLEKPEEK QVSYDDLTCGICFESYSQDFIKSVTCGHPFCSECWGLYIHTNINDGPGCLVLRCPEPTCAAAVGDDVINELGFEEDRKKYYRYLARSYVESNKRRKWCPA PGCDYAIDFVGCDGDFDVTCVCSHSFCFNCCEERHRPVGCDTVKKWNLKNSSDSQTETWKKAYTKPCPECQRPIEKNAGCMRMSCTTPCYHMFCWICLKD WSVHGYGGSCNRYVGNPQPEETSPLRQELLKYQHYYDRWAANEKSRQIALTDLGKVRNNHLKEISKLYGQPETQLEFLTEAWQQIVECRRVLKWTYAYGY YLAEDDDAKAKLFVYLQGQAESSLERFHDCAERELKIFIDPDELSDSFNDFRLKLIHLTGVTKNYFKNLVTALENGLSDVASSSKQQKTSICRRLKVPAG ETCNRMTTPEDRPSNLYTAITRTYANPNKTKAPKKTMGAALEITTQTKRRTADNLTPQGEWSCVFCSYMNPGSAETCEACNRGAWTCQHCTYANPRTATT CQMCAETQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131300 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	1.73	0.9324
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	2.00	0.9228
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Potri.012G066700 [exp]	2.82	0.9073
AT4G14090			UDP-Glycosyltransferase superf...		Potri.017G101800 [exp]	3.87	0.9127
AT5G41350			RING/U-box superfamily protein...		Potri.003G129900 [exp]	4.47	0.8993
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091300 [exp]	9.79	0.8907
AT1G52190			Major facilitator superfamily ...		Potri.006G240000 [exp]	15.19	0.8909
AT3G10190			Calcium-binding EF-hand family...		Potri.016G040900 [exp]	16.15	0.8608
AT1G12970		PIRL3	plant intracellular ras group-...		Potri.010G046500 [exp]	16.43	0.8948
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.003G163000 [exp]	17.32	0.8490

Compare expression of checked genes

Potri.002G131300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.