Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47550 1517 / 0 SEC3A exocyst complex component sec3A (.1.2) AT1G47560 1466 / 0 SEC3B exocyst complex component sec3B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039100 [exp] 1614 / 0 AT1G47550 1534 / 0.0 exocyst complex component sec3A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015090 [exp] 1530 / 0 AT1G47550 1605 / 0.0 exocyst complex component sec3A (.1.2) Lus10032737 [exp] 1521 / 0 AT1G47550 1599 / 0.0 exocyst complex component sec3A (.1.2) Lus10001022 [exp] 837 / 0 AT1G47550 1300 / 0.0 exocyst complex component sec3A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF04129 [poplar] [flax] Vps52 Vps52 / Sac2 family CL0266 [poplar] [flax] PH PF15277 [poplar] [flax] Sec3-PIP2_bind Exocyst complex component SEC3 N-terminal PIP2 binding PH
Representative CDS sequence Show only first row Show all	>Potri.002G131400.1 pacid=42779564 polypeptide=Potri.002G131400.1.p locus=Potri.002G131400 ID=Potri.002G131400.1.v4.1 annot-version=v4.1 ATGGCGAAATCGAGCGCCGATGACGAGGAGCTAAGGAGAGCCTGCGAGGCAGCAATTGAAGGCACAAAACAGAAGATCGTATTGTCGATCCGTGTTGCCA AGAGCCATGGGATCTGGGGCAAATCTGGGAAATTAGGACGTCACATGGCCAAACCTAGGGTTCTCTCTCTCTCCACAAAATCTAAGGGTCAGAGGACGAA AGCCTTTCTTCGAGTGCTAAAATATTCAACTGGAGGAGTACTTGAGCCAGCAAAGTTATACAAACTCAAGCATCTTTCCAAAGTGGAGGTTATAGCTAAT GATCCCAGTGGATGCTCGTTTACCCTGGGATTTGATAACCTTAGAAGCCAGAGTGTTACTCCACCGCAATGGACTATGCGCAATATTGATGATAGGAACC GCCTTTTATTTTGCCTCTTAAACATCTGCAAAGATGTCCTTGGCCGTCTTCCAAAAGTTGTTGGCATAGATGTTGTGGAGATGGCACTTTGGGCTAAGGA AAATACACCCGCAGTTCCCAAGCAAACGAATCAACAGGATGGAGTGCCTGTTGCAGCTACTGTCACAGAAAGTGACTTGAAAGTGACTGTTGAAAGAGAA CTTGTCTCCCAAGCGAAGGAGGAGGACATGGAGGCTCTTCTTGGCAATTATTTAATGGGTATTGGTGAAGCAGAGGTGTTTTCAGAAAGGTTGAAGCGTG AGCTTCTTGCTCTGGAAGCTGCAAATGTGCATGCCATTTTAGAAAATGAACCTTTAATAGAAGAGGTGTTGCAAGGGCTTGAAGCTGCAACATATTGTGT TGATGACATGGATGAGTGGTTAGGCATTTTCAACGTGAAACTTAGACATATGAGAGAAGACATTGAATCAATAGAAACCCGCAATAACAAATTGGAGATG CAGTCTGTAAATAATGTATCACTCATTGAAGAACTTGATAAGCTACTTGAACGACTGCGGGTCCCTTCTGAATATGCAGCATGTCTAACAGGAGGTTCAT TTGATGAGGCTCACATGCTTCAAAACATTGAAGCATGTGAGTGGTTAACTGGTGCTTTACGTGGACTTCAAGTGCCTAATTTGGATCCAAGCTATGCAAA TACGCGTGCTGTTAAAGAAAAGCGCACAGAACTTGAAAAATTAAAAACTATGTTTGTCAGGAGAGCTTCTGAGTTCTTGAGGAACTACTTTGCAAGTTTG GTGGATTTCATGATAAGCGACAAGAGTTACTTTTCACAACGTGGACAGTTAAAGAGGCCTGACCATGCTGACTTAAGGTACAAATGCAGGACATACGCTC GCCTTCTACAGCATCTAAAGAGCCTTGATAAGAACTGCTTGGGTCCTTTGAGGAAAGCATATTGTAGCTCCCTTAATCTGCTTCTTCGTCGGGAGGCTCG TGAATTTGCTAATGAGCTCCGTGCCAGTACAAAAGCATCAAGAAATCCAACTGTCTGGTTGGAAGCTTCTGCAGGCTCAAGTCATAGTTCACATAATGCA GATACATCTGCAGTTTCTGAGGCTTATGCCAAAATGCTGACAATATTTATCCCACTCCTTGTAGATGAGAGTTCTTTTTTTGCACACTTCATGTGCTTCG AGGTTCCTGCACTTGTTCCCCCAGGAGGTGTAGCTAATGGTAATAAAGGTGGTTACAATGATGCCGATGACAATGATGATTTGGGTATCATGGACATTGA TGAGAATGATGGCAAAGCTGGTAAAAATTCTGCAGATCTGGCAGCACTAAATGAATCTCTTCAGGATTTGCTTAATGGAATCCAAGAAGATTTTTATGCT GTGGTTGATTGGGCATACAAGATAGATCCTCTACGCTGCATATCAATGCATGGGATTACAGAGCGCTATCTCTCTGGTCAGAAAGCTGATGCTGCAGGAT TTGTGCGTCTCTTGCTTGGTGACCTAGAGTCCAGAATTTCTGTGCAATTCAATCGTTTTGTTGATGAAGCTTGCCACCAAATTGAAAGAAATGAGCGTAA TGTGCGGCAGATGGGGGTTTTATCCTACATCCCAAGATTTGCAACTCTTGCAACTCGTATGGAGCAGTATATCCAGGGACAATCTAGGGATTTGGCTGAT CAAGCGCACACAAAATTTGTTAGCATAATGTTTGTGACTTTGGAGAAAATTGCACAAACAGATCCAAAATATGCAGATGTTTTCCTTTTAGAAAACTATG CTGCATTTCAAAATAGCTTGTATGACCTTGCCAATGTTGTGCCAACTTTAGCCAAATTTTATCACCAGGCAAGCGAAGCTTATGAACAAGCTTGTACACG TCATATCAGCATCATTATTCTCTATCAATTTGAAAAACTTTTCCAGTTTACTCGCAAGATTGAGGATTTGATGTTCACCATAACACCAGAAGAGATCCCT TTCCAGCTTGGATTGTCAAAAATGGATCTCCGGAAGATGTTAAAATCTAGTTTATCTGGGGTTGACAAGTCTATTAGTGCAATGTATAAGAGGTTACAGA AGAACTTAACTTCAGAAGAACTGTTGCCTTCTTTGTGGGATAAGTGCAAGAAGGATTTCTTGGACAAGTATGAGAGTTTTGCACAACTAGTTGCAAAGAT CTATCCCAATGAAAGCATCCCTTCCGTGTCAGAAATGAGAGAGCTTCTGGCGTCCATGTGA
AA sequence Show only first row Show all	>Potri.002G131400.1 pacid=42779564 polypeptide=Potri.002G131400.1.p locus=Potri.002G131400 ID=Potri.002G131400.1.v4.1 annot-version=v4.1 MAKSSADDEELRRACEAAIEGTKQKIVLSIRVAKSHGIWGKSGKLGRHMAKPRVLSLSTKSKGQRTKAFLRVLKYSTGGVLEPAKLYKLKHLSKVEVIAN DPSGCSFTLGFDNLRSQSVTPPQWTMRNIDDRNRLLFCLLNICKDVLGRLPKVVGIDVVEMALWAKENTPAVPKQTNQQDGVPVAATVTESDLKVTVERE LVSQAKEEDMEALLGNYLMGIGEAEVFSERLKRELLALEAANVHAILENEPLIEEVLQGLEAATYCVDDMDEWLGIFNVKLRHMREDIESIETRNNKLEM QSVNNVSLIEELDKLLERLRVPSEYAACLTGGSFDEAHMLQNIEACEWLTGALRGLQVPNLDPSYANTRAVKEKRTELEKLKTMFVRRASEFLRNYFASL VDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEASAGSSHSSHNA DTSAVSEAYAKMLTIFIPLLVDESSFFAHFMCFEVPALVPPGGVANGNKGGYNDADDNDDLGIMDIDENDGKAGKNSADLAALNESLQDLLNGIQEDFYA VVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLESRISVQFNRFVDEACHQIERNERNVRQMGVLSYIPRFATLATRMEQYIQGQSRDLAD QAHTKFVSIMFVTLEKIAQTDPKYADVFLLENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQACTRHISIIILYQFEKLFQFTRKIEDLMFTITPEEIP FQLGLSKMDLRKMLKSSLSGVDKSISAMYKRLQKNLTSEELLPSLWDKCKKDFLDKYESFAQLVAKIYPNESIPSVSEMRELLASM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.002G131400 [exp]	0	1
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	2.82	0.8999	Pt-VPS33.2
AT3G11130			Clathrin, heavy chain (.1)		Potri.008G070600 [exp]	9.94	0.8547
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.010G096500 [exp]	10.24	0.8911	Pt-THRRS.2
AT3G52570			alpha/beta-Hydrolases superfam...		Potri.016G076550 [exp]	10.39	0.8431
AT4G31150			endonuclease V family protein ...		Potri.018G001000 [exp]	11.83	0.8756
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	14.45	0.8638
AT3G61540			alpha/beta-Hydrolases superfam...		Potri.002G164700 [exp]	14.49	0.8483
AT3G15890			Protein kinase superfamily pro...		Potri.001G203601 [exp]	18.70	0.8708
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	20.39	0.8901
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.001G398900 [exp]	23.04	0.8771

Compare expression of checked genes

Potri.002G131400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.