Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47530 197 / 2e-61 MATE efflux family protein (.1) AT1G12950 163 / 2e-48 RSH2 root hair specific 2 (.1) AT3G26590 162 / 5e-48 MATE efflux family protein (.1) AT5G38030 159 / 3e-47 MATE efflux family protein (.1) AT1G23300 157 / 4e-46 MATE efflux family protein (.1) AT5G44050 134 / 1e-37 MATE efflux family protein (.1) AT4G25640 134 / 1e-37 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT5G65380 130 / 2e-36 MATE efflux family protein (.1) AT4G00350 125 / 3e-34 MATE efflux family protein (.1) AT1G33080 113 / 5e-30 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G187100 [exp] 175 / 5e-53 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 166 / 2e-49 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 140 / 8e-40 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 135 / 3e-38 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 130 / 2e-36 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.015G147600 [exp] 129 / 8e-36 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.012G144900 [exp] 127 / 5e-35 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.004G016400 [exp] 112 / 1e-29 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 112 / 1e-29 AT3G21690 654 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042130 [exp] 207 / 1e-65 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10002367 [exp] 182 / 8e-60 AT1G47530 191 / 1e-59 MATE efflux family protein (.1) Lus10002366 [exp] 183 / 1e-59 AT1G47530 192 / 2e-59 MATE efflux family protein (.1) Lus10016296 [exp] 186 / 2e-57 AT1G47530 423 / 4e-145 MATE efflux family protein (.1) Lus10010035 [exp] 184 / 1e-56 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 166 / 1e-49 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 166 / 2e-49 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10036852 [exp] 153 / 6e-45 AT1G23300 598 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 153 / 1e-44 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 149 / 5e-43 AT3G26590 675 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.002G132300.1 pacid=42777630 polypeptide=Potri.002G132300.1.p locus=Potri.002G132300 ID=Potri.002G132300.1.v4.1 annot-version=v4.1 ATGGCCACGGATATTACTCCACTTCTACCTAGCCAGAACAATATTGGGCATCATGAGCAAAAACTTTTTAGCATTGTTAATGAGTCCGGGCAAGAATCAA AGAGGTTATGGAAGCTTGCAGGGCCAGCAATTCTTACTACCATATGTCAAAACTCGCTTGGTGCACTCACTCAAACCTTTGCAGGTCTCGTCAATGAGGT TGATCTTGCTGCTGTTTCTGTTGAGAATTCTGTTATTGCTGGTCTAGCATTTGGGGTCATGTTGGGAATGGGGAGTGCATTGGAGACACTATGTGGGCAA GCATATGGCGCTGGAAAGCTGAGAATGTTGGGCAGATACATGCAGAGATCATGGATCATTCTCTTGACAACGGCTTGCTTAATGATACCAATTTATGTTT GGTCTCCTCCCATGTTAGAGCTCTTTGGAGAGACGACTCAGATATCTGAAGCTGCTGAAACAAACGTTAACTAA
AA sequence Show only first row Show all	>Potri.002G132300.1 pacid=42777630 polypeptide=Potri.002G132300.1.p locus=Potri.002G132300 ID=Potri.002G132300.1.v4.1 annot-version=v4.1 MATDITPLLPSQNNIGHHEQKLFSIVNESGQESKRLWKLAGPAILTTICQNSLGALTQTFAGLVNEVDLAAVSVENSVIAGLAFGVMLGMGSALETLCGQ AYGAGKLRMLGRYMQRSWIILLTTACLMIPIYVWSPPMLELFGETTQISEAAETNVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47530			MATE efflux family protein (.1...		Potri.002G132300 [exp]	0	1
AT4G35780		STY17	serine/threonine/tyrosine kina...		Potri.007G060600 [exp]	4.24	0.8740
AT4G27190			NB-ARC domain-containing disea...		Potri.001G434000 [exp]	23.49	0.8294	Pt-RGA-II24.63
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426430 [exp]	25.82	0.7975
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145572 [exp]	28.84	0.8282
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Potri.005G208301 [exp]	28.98	0.8324
AT4G23270		CRK19	cysteine-rich RLK (RECEPTOR-li...		Potri.011G035850 [exp]	29.56	0.7774
					Potri.001G432333 [exp]	33.77	0.8287
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G220201 [exp]	39.71	0.8024
AT4G27190			NB-ARC domain-containing disea...		Potri.018G136700 [exp]	43.95	0.8235
AT2G02250		ATPP2-B2	phloem protein 2-B2 (.1)		Potri.018G016000 [exp]	48.27	0.8251

Compare expression of checked genes

Potri.002G132300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.