Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 251 / 2e-79 F-box/RNI-like superfamily protein (.1) AT1G78760 94 / 1e-20 F-box/RNI-like superfamily protein (.1) AT5G53840 86 / 4e-18 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22610 85 / 1e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56420 83 / 4e-17 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G32375 81 / 1e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G66310 81 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22660 78 / 3e-15 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) AT5G56370 77 / 3e-15 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT4G10400 75 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039700 [exp] 706 / 0 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 299 / 1e-97 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 246 / 5e-77 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 224 / 1e-68 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 102 / 2e-23 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G121400 [exp] 79 / 1e-15 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G136200 [exp] 77 / 4e-15 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.011G024200 [exp] 70 / 1e-12 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.017G146500 [exp] 69 / 2e-12 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016297 [exp] 348 / 6e-120 AT1G13570 117 / 8e-31 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 263 / 6e-84 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 257 / 2e-81 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10030569 [exp] 203 / 2e-60 AT1G13570 183 / 5e-53 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 189 / 5e-57 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10030920 [exp] 194 / 7e-57 AT1G13570 179 / 1e-51 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 149 / 1e-40 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 145 / 6e-39 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 122 / 2e-30 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 118 / 1e-28 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08387 [poplar] [flax] FBD FBD
Representative CDS sequence Show only first row Show all	>Potri.002G132400.2 pacid=42777788 polypeptide=Potri.002G132402.1.p locus=Potri.002G132400 ID=Potri.002G132400.2.v4.1 annot-version=v4.1 ATGAGTAATGTTACGCAAAGAGAACCACCCAAATTCCCATGTGAAATAGACACAGAGCTGGACAGGATCAGCAGCTTACCTGGGCATGTTTTAGGCCAAA TTCTATCACTTTTGCCAATTAGGGATGCAGTGAGAACTAGTGCTTTAAAAAGAAAGTGGAGGTACAAATGGTCTCAAATTCCTCATATTGTGTTTGATTC TCAAGGCATCTCAATCTCTTCCCAAGATCAAACTACAATTAAGAATAAGCTTGTCAATATTATCGACCATATACTTTTACTTCACAATGGTCCAATTTAC AAGTTCAAACTATCTCACTGCGATCTATTAGCTGTCAGCGATATTGATCGATGGATTCTTCATTTATCGAGAGGTTCTGCCAAAGAATTTGTACTTGAGA TATGGAAAGGCCAGCAGTATAAGTTGCCTTCTTGTTTGTTCTCATTTAAGAACTTGGTTTATTTAGAATTATTTAATTGTTTGCTAAAACCTCCTTTGGC TTTCAAAGGATTCCGGAATTTGAAGAATCTTGACCTTCAGCATGTTACCCTGGCACAGGAGGTGTTTGAGAAACTGATTTCTAGCTGTGCTATGCTTGAG AGGTTGACATTGATTAACTTTGATGGTTTTACTCATCTTAACATCAATGCACCTAATCTTCAATTTTTTGATGTCGGAGGTGTTTTTGATGATGTTAGTT TTGAGAATACTTTTGTACTGGCTCTGGTTTCCATTGGATTGTATGTGAATGTCAAAAATGACCAGAATGTATCTTATGGGAGTTCTAGTAAATTGCTCAG GTTTTTTGTTAATCTGCCCCATGTTCGAAGACTTGAGATTCAGAGTTACTTTCTTAAGTATTTGGCTATCGGCAAAGTTCCAAGCAAGTTGCCAAAGCCA TGCATTGATCTGAACTACCTTTCTATACGCTTAAATTTCAATGACTATGAAGAGAATTCAGCTGCCTTTTGTCTGTTGAGAAGCTGCCCCAATTTGCAAG AAATAGAGATATTGGCTCGCCCAGAGGAACAAGCTGTTGTGGGACCAGTAACTGATTTCTGGGACGATGACCATTGGAAGTGTTTATTTGGCCAATTGCG ACTGGTGAAAATAGTTGGCATCTCTGGCATTAGATCTGAACTTGATTGCATTAAATTTCTGCTTTCAAACTCTCCTGTGCTTGAGAAGATGACCATTAAG CCTGTTTCCAACGAGGGAGGATGGGAGTTGGTAAAACAATTGCTGCATTTTCGGCGAGCCTCAATCCAAGCAGAAGTCTTTCATCTGGAGCTATAA
AA sequence Show only first row Show all	>Potri.002G132400.2 pacid=42777788 polypeptide=Potri.002G132402.1.p locus=Potri.002G132400 ID=Potri.002G132400.2.v4.1 annot-version=v4.1 MSNVTQREPPKFPCEIDTELDRISSLPGHVLGQILSLLPIRDAVRTSALKRKWRYKWSQIPHIVFDSQGISISSQDQTTIKNKLVNIIDHILLLHNGPIY KFKLSHCDLLAVSDIDRWILHLSRGSAKEFVLEIWKGQQYKLPSCLFSFKNLVYLELFNCLLKPPLAFKGFRNLKNLDLQHVTLAQEVFEKLISSCAMLE RLTLINFDGFTHLNINAPNLQFFDVGGVFDDVSFENTFVLALVSIGLYVNVKNDQNVSYGSSSKLLRFFVNLPHVRRLEIQSYFLKYLAIGKVPSKLPKP CIDLNYLSIRLNFNDYEENSAAFCLLRSCPNLQEIEILARPEEQAVVGPVTDFWDDDHWKCLFGQLRLVKIVGISGIRSELDCIKFLLSNSPVLEKMTIK PVSNEGGWELVKQLLHFRRASIQAEVFHLEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13570			F-box/RNI-like superfamily pro...		Potri.002G132400 [exp]	0	1
AT2G30480			unknown protein		Potri.013G157800 [exp]	4.24	0.8616
					Potri.004G019766 [exp]	14.07	0.8695
					Potri.001G076920 [exp]	20.19	0.8487
AT4G25550			Cleavage/polyadenylation speci...		Potri.012G140301 [exp]	29.24	0.8551
AT3G42170			BED zinc finger ;hAT family di...		Potri.017G019466 [exp]	34.49	0.8603
AT1G27170			transmembrane receptors;ATP bi...		Potri.011G012801 [exp]	39.62	0.8509
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Potri.002G235200 [exp]	43.23	0.8423	PDS.2
					Potri.010G029350 [exp]	47.14	0.8220
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.006G094000 [exp]	52.76	0.8290
AT1G27170			transmembrane receptors;ATP bi...		Potri.006G282100 [exp]	54.20	0.8485

Compare expression of checked genes

Potri.002G132400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.