Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19270 669 / 0 DA1 DA1 (.1) AT4G36860 601 / 0 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT2G39830 496 / 7e-173 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT5G66620 365 / 5e-120 DAR6 DA1-related protein 6 (.1) AT5G66610 355 / 2e-117 DAR7 DA1-related protein 7 (.1.2) AT5G66630 317 / 1e-100 DAR5 DA1-related protein 5 (.1) AT5G17890 330 / 2e-100 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66640 288 / 2e-92 DAR3 DA1-related protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039900 [exp] 870 / 0 AT1G19270 654 / 0.0 DA1 (.1) Potri.005G128900 [exp] 642 / 0 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.005G128800 [exp] 622 / 0 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.007G032500 [exp] 618 / 0 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.010G197500 [exp] 513 / 1e-179 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.T124504 [exp] 182 / 3e-53 AT1G19270 182 / 3e-53 DA1 (.1) Potri.009G111446 [exp] 92 / 2e-22 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032736 [exp] 735 / 0 AT1G19270 628 / 0.0 DA1 (.1) Lus10010033 [exp] 733 / 0 AT1G19270 657 / 0.0 DA1 (.1) Lus10016298 [exp] 723 / 0 AT1G19270 646 / 0.0 DA1 (.1) Lus10018789 [exp] 678 / 0 AT1G19270 575 / 0.0 DA1 (.1) Lus10022486 [exp] 625 / 0 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10016791 [exp] 612 / 0 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10040258 [exp] 503 / 2e-172 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10004690 [exp] 407 / 7e-138 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10000138 [exp] 219 / 1e-69 AT4G36860 203 / 2e-63 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00412 [poplar] [flax] LIM LIM domain CL0126 [poplar] [flax] Peptidase_MA PF12315 [poplar] [flax] DA1-like Protein DA1
Representative CDS sequence Show only first row Show all	>Potri.002G132700.1 pacid=42776935 polypeptide=Potri.002G132700.1.p locus=Potri.002G132700 ID=Potri.002G132700.1.v4.1 annot-version=v4.1 ATGGGTTGGCTTAGCAAGATTTTTAAAGGGTCCAATCATAATATTTCAGAAGGGCATTACTATGGAAATTATGGACAGGATGCTAACTATAATGCACCTT CTACGTCAGGGGAAGCATATTTGGAGCAGGAAAATGAGGAGGATATCGATCGTGCTATTGCATTATCCCTTTTAGAGGACAATCACATTGGAAAAAATGT CGCAGATGTTGAGATTCAATTGAAAGAAGATGAACAACTTGCCAAAGCTTTACAAGAAAGTTTAAGCGTTGAATCTCCTCCTCGACATGGAATTCCATAT CAAGGAAATGCATATCAGCCTTATCCTATCCACTTTCCAATGGGATTCAGGGTATGCGCTGGTTGCAATACAGAGATTGGCCAAGGAAAATTTCTAAATT GCCTCAATGCATTTTGGCATCCAGAATGTTTCCGTTGTCATGCTTGCGGCCTACCAATTTCTGATTACGAGTTCTCGATGACTGGAAATTACCCTTATCA TAAATTTTGCTACAAAGAGCGTTACCATCCAAAGTGTGAAGTCTGTAAGCTCTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCTCATCCT TTTTGGATCCAGAAGTACTGCCCTTCTCATGAACATGATGGTACTCCTCGGTGTTGCAGCTGTGAGCGAATGGAGCCACAAGACACGGGATATGTTGCCC TTAATGATGGTCGGAAGCTCTGTCTTGAGTGCCTGGACTCTGCAGTCATGGATACCAAGCATTGCCAACCCCTTTATCTTGATATACAAGAATTTTATGA ACGTTTAAATATGAAGGTGGAGCAGGACGTTCCACTACTATTGGTTGAAAGACAAGCACTAAATGAAGCCCGGGATGGAGAAAAGAATGGACATTACCAC ATGCCAGAGACTAGAGGACTTTGCCTTTCTGAGGAACAAACCATTAGCACCGTATCAAAGCAGCCAAGGTTTGGAGCAGGGAACCGAGCCATGGGTATGA TGACAGAGCCTTACAAACTGACACGTCGTTGTGAGGTTACCGCAATTCTGATTTTGTATGGCCTCCCAAGGTTACTTACTGGGTCAATCCTAGCTCATGA GATGATGCATGCATGGATGCGGCTGAAAGGTTTCCAAACTCTCAGTCAAGATGTGGAAGAGGGTATTTGTCAGGTGCTTGCACACATGTGGTTGGATTCA GAGCTCACACCCACTTCAGGAAGCAATATCGCATCATCCTCTGCATCCAGGACAACAAAAAATGGTACAAGATCTCAATTTGAGAGAAAGCTTGGGGATT TTTTCAAGCATCAAATTGAATCAGATACTTCCCCGGTTTATGGAGATGGATTTAGAGCTGGTCAGCAAGCAGTGCAAAAATATGGTCTCGAAAGAACACT TGATCATATACGAATGACAGGGAAGTTTCCATATTGA
AA sequence Show only first row Show all	>Potri.002G132700.1 pacid=42776935 polypeptide=Potri.002G132700.1.p locus=Potri.002G132700 ID=Potri.002G132700.1.v4.1 annot-version=v4.1 MGWLSKIFKGSNHNISEGHYYGNYGQDANYNAPSTSGEAYLEQENEEDIDRAIALSLLEDNHIGKNVADVEIQLKEDEQLAKALQESLSVESPPRHGIPY QGNAYQPYPIHFPMGFRVCAGCNTEIGQGKFLNCLNAFWHPECFRCHACGLPISDYEFSMTGNYPYHKFCYKERYHPKCEVCKLFIPTNPAGLIEYRAHP FWIQKYCPSHEHDGTPRCCSCERMEPQDTGYVALNDGRKLCLECLDSAVMDTKHCQPLYLDIQEFYERLNMKVEQDVPLLLVERQALNEARDGEKNGHYH MPETRGLCLSEEQTISTVSKQPRFGAGNRAMGMMTEPYKLTRRCEVTAILILYGLPRLLTGSILAHEMMHAWMRLKGFQTLSQDVEEGICQVLAHMWLDS ELTPTSGSNIASSSASRTTKNGTRSQFERKLGDFFKHQIESDTSPVYGDGFRAGQQAVQKYGLERTLDHIRMTGKFPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19270		DA1	DA1 (.1)		Potri.002G132700 [exp]	0	1
AT3G30300			O-fucosyltransferase family pr...		Potri.017G101600 [exp]	1.00	0.7703
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Potri.008G111600 [exp]	4.00	0.7097
AT5G59070			UDP-Glycosyltransferase superf...		Potri.009G038400 [exp]	6.32	0.6460
AT5G17680			disease resistance protein (TI...		Potri.019G068200 [exp]	7.74	0.7338
AT4G32160			Phox (PX) domain-containing pr...		Potri.006G256000 [exp]	9.48	0.7164
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.014G119600 [exp]	11.83	0.6902
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.008G025900 [exp]	16.49	0.6630
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113066 [exp]	18.70	0.6660
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014340 [exp]	23.36	0.6663
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.016G066500 [exp]	23.91	0.5980

Compare expression of checked genes

Potri.002G132700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.