Plant FIBer expression Database

Potri.002G133100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75020 536 / 0 LPAT4 lysophosphatidyl acyltransferase 4 (.1.2)
AT3G18850 483 / 1e-171 LPAT5 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5)
AT3G57650 177 / 7e-52 LPAT2 lysophosphatidyl acyltransferase 2 (.1)
AT1G51260 149 / 2e-41 LPAT3 lysophosphatidyl acyltransferase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G040600
[exp]
692 / 0 AT1G75020 485 / 3e-172 lysophosphatidyl acyltransferase 4 (.1.2)
Potri.T125204
[exp]
514 / 0 AT3G18850 493 / 9e-176 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5)
Potri.009G112307
[exp]
514 / 0 AT3G18850 493 / 1e-175 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5)
Potri.016G053000
[exp]
173 / 5e-50 AT3G57650 606 / 0.0 lysophosphatidyl acyltransferase 2 (.1)
Potri.006G055000
[exp]
168 / 1e-48 AT3G57650 587 / 0.0 lysophosphatidyl acyltransferase 2 (.1)
Potri.009G054500
[exp]
152 / 2e-42 AT3G57650 374 / 2e-128 lysophosphatidyl acyltransferase 2 (.1)
Potri.001G259200
[exp]
148 / 6e-41 AT1G51260 521 / 0.0 lysophosphatidyl acyltransferase 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032727
[exp]
607 / 0 AT1G75020 530 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2)
Lus10018803
[exp]
598 / 0 AT1G75020 531 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2)
Lus10011298
[exp]
174 / 8e-51 AT3G57650 609 / 0.0 lysophosphatidyl acyltransferase 2 (.1)
Lus10040492
[exp]
173 / 2e-50 AT3G57650 610 / 0.0 lysophosphatidyl acyltransferase 2 (.1)
Lus10042356
[exp]
170 / 6e-49 AT3G57650 611 / 0.0 lysophosphatidyl acyltransferase 2 (.1)
Lus10026312
[exp]
169 / 9e-49 AT3G57650 615 / 0.0 lysophosphatidyl acyltransferase 2 (.1)
Lus10002556
[exp]
138 / 8e-37 AT1G51260 496 / 8e-176 lysophosphatidyl acyltransferase 3 (.1)
Lus10027375
[exp]
135 / 1e-35 AT1G51260 495 / 1e-175 lysophosphatidyl acyltransferase 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0228 Acyltransferase PF01553 Acyltransferase Acyltransferase
CL0228 PF16076 Acyltransf_C Acyltransferase C-terminus
Representative CDS sequence
>Potri.002G133100.2 pacid=42778807 polypeptide=Potri.002G133100.2.p locus=Potri.002G133100 ID=Potri.002G133100.2.v4.1 annot-version=v4.1
ATGGAAGAAACTTGCAAGCCTCTCGAAACCGATGATAGACTAAAGCACCACCCTTTAACTCCTTTTAGGTTGATAAGGGGTCTTATATGTTTGTTGGTGT
ATCTTTCTACTGCTTTTATGTTTCTAGTATATTTTGCACCTGTTGTGGCTGTCCTGATGCGCCTTTTCAGCATCCACTATTGTAGAAAAACAACCTCCTT
CATCTTTGCTATTTGGTTAGCTTTGTGGCCCTTTCTATTTGAAAAGATAAATGGGACCAAAGTTGTATTTTCTGGAGATTTAGTTCCACCAAAAGAACGT
GTTTTGATAATTGCTAATCACAGAACTGAGGTTGATTGGATGTACTTGTGGGATCTGGCATTGCGGAAGGGGTGTCTGGGCTACATCAAGTACATTCTCA
AGAGCAGCTTGATGAAACTACCTGTCTTTGGTTGGGGATTCCATATTTTGGAGTTCATTTCAGTCGAGAGGAATTGGGAAGTTGATGAACCTACCATGCG
TGAAATGCTTTCGACTTTCAAGGATCCTCAAGATCCCTTGTGGCTAGCACTTTTCCCTGAAGGAACTGATTTTAGTGAACAGAAATGCCAGAGGAGCCAA
AAGTTTGCCAATGAAGTTGGACTTCCTGTGCTTAAGAATGTGCTACTTCCTAAAACAAGGGGTTTTTGCGTATGCTTGGAAGTCCTACGGGGTTCCTTGG
ATGCAGTTTATGATGTGAGTATTGCGTATAAGCACCAACTGCCTACCTTTCTGGACAACGTATTTGGTACTGATCCCTCAGAAGTTCACATTCATGTTCG
GCGCATCCCAGCCAAGGAGATCCCAGCTTCTGATTCTGAGGCTGCTACGTGGTTAATGGATAGGTTCCAGCTCAAGGATCGTTTGCTCTCAGACTTCAAA
GCTCACGGCCATTTCCCTAACGAAGGAACAGAACAAGAACTTTCTACACTGAGATGCTTGGTAAATTTTACTGTGGTAATTTCATTGACTGCATTTTTCA
TTTACCTTACACTTTTTTCATCCATTTGGTTTAAAACATATGTGAGTTTAGCTTGTGCCTACCTTGCTTCAGCTACTCACTTTAAATTTCGGCCATTACC
AGTTACGAAATTGTTATAG
AA sequence
>Potri.002G133100.2 pacid=42778807 polypeptide=Potri.002G133100.2.p locus=Potri.002G133100 ID=Potri.002G133100.2.v4.1 annot-version=v4.1
MEETCKPLETDDRLKHHPLTPFRLIRGLICLLVYLSTAFMFLVYFAPVVAVLMRLFSIHYCRKTTSFIFAIWLALWPFLFEKINGTKVVFSGDLVPPKER
VLIIANHRTEVDWMYLWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERNWEVDEPTMREMLSTFKDPQDPLWLALFPEGTDFSEQKCQRSQ
KFANEVGLPVLKNVLLPKTRGFCVCLEVLRGSLDAVYDVSIAYKHQLPTFLDNVFGTDPSEVHIHVRRIPAKEIPASDSEAATWLMDRFQLKDRLLSDFK
AHGHFPNEGTEQELSTLRCLVNFTVVISLTAFFIYLTLFSSIWFKTYVSLACAYLASATHFKFRPLPVTKLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G75020 LPAT4 lysophosphatidyl acyltransfera... Potri.002G133100
[exp]
0 1
AT3G12955 SAUR-like auxin-responsive pro... Potri.001G458000
[exp]
1.00 0.9707 SAUR4
AT1G05170 Galactosyltransferase family p... Potri.002G228900
[exp]
2.00 0.9495
AT1G65020 unknown protein Potri.013G079201
[exp]
4.12 0.9262
AT5G18580 FASS2, TON2, GD... GORDO, FASS 1, EMBRYO DEFECTIV... Potri.010G022300
[exp]
4.47 0.9433
AT5G39510 ZIG1, SGR4, ATV... SHOOT GRAVITROPSIM 4, VESICLE ... Potri.017G087700
[exp]
5.47 0.9327
AT1G75840 ATROP4, ATGP3, ... RHO-LIKE GTP BINDING PROTEIN 4... Potri.005G242000
[exp]
6.78 0.9222 Pt-RAC4.2
Potri.011G057400
[exp]
6.92 0.9311
AT4G26570 ATCBL3 calcineurin B-like 3 (.1.2) Potri.011G094900
[exp]
6.92 0.9101 CBL2.1
AT3G54120 Reticulon family protein (.1) Potri.016G110200
[exp]
7.74 0.9420
AT2G34410 RWA3 REDUCED WALL ACETYLATION 3, O-... Potri.011G079400
[exp]
8.30 0.9475

Potri.002G133100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.