Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75030 136 / 2e-40 ATLP-3 thaumatin-like protein 3 (.1) AT1G75050 129 / 7e-38 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 122 / 5e-35 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G77700 109 / 3e-29 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 107 / 3e-29 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G19320 103 / 1e-27 Pathogenesis-related thaumatin superfamily protein (.1) AT1G73620 103 / 2e-27 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 92 / 9e-23 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G24620 92 / 3e-22 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G40020 89 / 5e-22 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040700 [exp] 176 / 4e-56 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.015G039200 [exp] 107 / 3e-29 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G173900 [exp] 107 / 6e-29 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.012G047800 [exp] 105 / 3e-28 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112600 [exp] 103 / 3e-27 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G087100 [exp] 102 / 4e-27 AT1G77700 384 / 2e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G210400 [exp] 99 / 1e-25 AT1G77700 273 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.009G132500 [exp] 99 / 2e-25 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 97 / 2e-24 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032726 [exp] 153 / 5e-47 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10009058 [exp] 111 / 1e-30 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10041899 [exp] 99 / 3e-25 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 95 / 9e-24 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 93 / 3e-23 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 92 / 4e-23 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 89 / 5e-22 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025629 [exp] 89 / 2e-21 AT1G77700 377 / 4e-130 Pathogenesis-related thaumatin superfamily protein (.1) Lus10032914 [exp] 86 / 6e-21 AT5G24620 353 / 1e-121 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10015591 [exp] 86 / 1e-20 AT5G24620 353 / 1e-120 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.002G133200.2 pacid=42777367 polypeptide=Potri.002G133200.2.p locus=Potri.002G133200 ID=Potri.002G133200.2.v4.1 annot-version=v4.1 ATGGCAATTTCCTCAATCTTTTTAACTGGATGCGCGTTTGATGAACCAGGCAATGGCAAGTGCATAACCGGTGACTGTGGTGGCACTCTAAAGTGTATTG GTGGTGGTTCTCCTCCTGTTGGTCCTGTGGAAGACTTTTATGATGTGAGTCTTGTTGATGGATACAATGGTGGCTTAGGTGTTAAGGCATTGGGTGGGTC TGGTGATTGTCAATATGCGGGTTGTGTTGCGGATCTTAAGGGGAACTGCCCCACGGAGCTCCGGGTCATGGATTCGGGTTCTACTGTTGCTTGCAAGAGT GCTTGTTCCGCCTTAAACGCCCCCGAACTTTCTTCCCGACACAATACTCAGATGTTCAAGAATGCGTGCCCGACAGCATATAGTTATGCTTATGATGATG CCTCAAGTGCTTGTACTTGCACCGGGTCTGATTACTTGATCATATTTTGTCCAAATGGGTCTGGATGA
AA sequence Show only first row Show all	>Potri.002G133200.2 pacid=42777367 polypeptide=Potri.002G133200.2.p locus=Potri.002G133200 ID=Potri.002G133200.2.v4.1 annot-version=v4.1 MAISSIFLTGCAFDEPGNGKCITGDCGGTLKCIGGGSPPVGPVEDFYDVSLVDGYNGGLGVKALGGSGDCQYAGCVADLKGNCPTELRVMDSGSTVACKS ACSALNAPELSSRHNTQMFKNACPTAYSYAYDDASSACTCTGSDYLIIFCPNGSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Potri.002G133200 [exp]	0	1
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Potri.019G076800 [exp]	1.41	0.9242	AGL12.1
AT2G45640		ATSAP18, HDA19	SIN3 ASSOCIATED POLYPEPTIDE 18...		Potri.014G074000 [exp]	10.00	0.8204
AT5G20810			SAUR-like auxin-responsive pro...		Potri.018G063400 [exp]	12.36	0.8246
AT5G04080			unknown protein		Potri.006G043300 [exp]	13.85	0.8585
AT5G43240			Protein of unknown function (D...		Potri.001G247300 [exp]	15.62	0.8592
AT5G62350			Plant invertase/pectin methyle...		Potri.012G127500 [exp]	18.84	0.8589
AT1G32583			unknown protein		Potri.015G101000 [exp]	21.49	0.7967
AT1G29380			Carbohydrate-binding X8 domain...		Potri.011G078500 [exp]	21.49	0.8637
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Potri.015G147000 [exp]	25.61	0.7969
AT3G27030			unknown protein		Potri.017G064500 [exp]	28.49	0.8557

Compare expression of checked genes

Potri.002G133200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.