Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42620 1396 / 0 metalloendopeptidases;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040800 [exp] 1571 / 0 AT5G42620 1354 / 0.0 metalloendopeptidases;zinc ion binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016304 [exp] 1377 / 0 AT5G42620 1299 / 0.0 metalloendopeptidases;zinc ion binding (.1.2) Lus10010792 [exp] 291 / 4e-92 AT5G42620 312 / 9e-101 metalloendopeptidases;zinc ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01457 [poplar] [flax] Peptidase_M8 Leishmanolysin CL0001 [poplar] [flax] EGF PF07974 [poplar] [flax] EGF_2 EGF-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G133300.1 pacid=42778105 polypeptide=Potri.002G133300.1.p locus=Potri.002G133300 ID=Potri.002G133300.1.v4.1 annot-version=v4.1 ATGGAGGTTTTTATAAACAAGTGTAGTTCATGTTCCGTACCTAGATTTGATACTAAGCTCAAATTCACACTCGTTGTTTTCGAGATTGCGTTGATATTGT TATGCTTTCTAGCTATTAATGCTGAAAGCCACGACCACCAATTGCAACAGCAAAGTGCAGAGAGGGGAAGTGAAAATATTATATCACATTCATGCATTCA CGACCAGATTATTGAAGAGAGGAAACGACCTGGTCGCCAGGTGTACTCTGTTACCCCACAGATTTATGGTCAGTCTGGTATCTCTAAACCCCTTCATCGC AAAGGGAGGGCATTGCTTGGAATTTCAGAATCATCGTTACAGCAAAAAGATGTAAAGCAACCAATTAGGATATTTTTAAATTATGATGCGGTTGGTCACT CACCTGACAGAGATTGCCGAAAAGTTGGTGACATTGTGAAGCTAGGGGAGCCTCCAGTGGCTTCTCGTCCTGGCACTCCTTGCAATCCCCATGGCGATCC TCCACTTTATGGTGATTGCTGGTACAATTGCACCGTGGATGATATTTCTGGAAAGGACAAAAAGCATCGGCTTCGCAAGGCTCTGGGGCAGACAGGTGAT TGGTTTAGGAGAGCATTGGCTGTTGAGCCTGTAAAGGGTAACTTGCGGTTAAGTGGATATTCTGCATGTGGGCAAGATGGAGGCGTACAACTTCCACGTG GATATGTTGAGGAGGGTGTTGCTGATGCGGACTTGGTTCTTTTGGTGACTACAAGACCAACCACTGGCAACACTCTTGCATGGGCAGTGGCATGTGAACG CGATCAATGGGGCCGTGCAGTTGCTGGACATGTGAATGTTGCCCCTCGCCATTTGACAGCTGAAGCAGAGACTTTACTTTCAGCTACCCTCATTCATGAG GTTATGCATGTCTTAGGTTTTGATCCTCACGCCTTTTCCCATTTTAGGGATGACAGAAAGAGAAGGCGCAGCCAGGTCACTGAACAACTCATGGATGAAA AGCTTGGCCGGATGGTAACGCGTGTGGTTCTTCCACGTGTTGTCATGCACTCGCGAAATCATTATGGGGCATTCTCCGAAAATTTAACAGGATTAGAACT TGAAGATGGGGGAGGACGTGGCACATCAGGGTCACATTGGGAAAAGAGGCTTCTGATGAATGAAATAATGACAGGATCTGTGGATACAAGATCGGTAGTT TCAAAAATGACACTAGCTCTGTTGGAAGATAGTGGATGGTACCAGGCTAACTATAGCATGGCAGATCATCTTGACTGGGGTCGAAATCAAGGAACTGACT TTGTTACATCCCCTTGCAACCTCTGGAAGGGGGCATATCATTGCAATGCTACCCAGTTGTCAGGCTGTACATACAACAGGGAGGCAGAGGGTTATTGTCC GATTGTAAGTTACACTGGGGATCTCCCCCAGTGGGCTCGTTACTTTCCACAGGCAAATAAAGGTGGGCAGTCATCGTTGGCCGACTACTGTACTTATTTT GTGGCGTATTCTGATGGATCTTGTACAGACACAAACAGCGCAAGAGCACCAGATAGAATGTTAGGTGAAGTGCGAGGGAGTAGCTCCAGGTGTATGGCCT CATCATTAGTACGTACTGGATTTGTCAGGGGCTCAATGACCCAAGGAAATGGTTGTTATCAGCACAGATGTGTAAATAACTCCCTCGAGGTTGCTGTGGA TGGTATTTGGAAAGTTTGCCCGGAAGCTGGAGGACCAGTTCAATTCCCTGGCTTTAATGGGGAGCTGATTTGTCCTGCTTACCAGGAGCTCTGCAGTACA GGTTCAGTCTCTGTACCTGGACAGTGCCCCAGCTCTTGTAATTTTAATGGGGACTGTATAGATGGAAGGTGTCACTGTTTCATAGGGTTTCACAGTCATG ATTGCAGTAAACGCTTCTGTCCGGGGAATTGCAATGGTCAGGGTAAGTGCCTTTCAAATGGGATCTGCCAATGTGAAAATGGTTACACTGGCATCGACTG CTCTACTGCTGTTTGTGATGAACAATGCAGCCTCCATGGTGGGGTCTGTGACAATGGAGTTTGTGAATTCCGTTGCTCAGACTACGCAGGCTACACATGT CAGAACAGCTCGACTCTTCTCTCCAGTCTCTCAGTTTGCAAAAATGTACTGGAGAGTGACATGTCTGGCCAACACTGTGCACCCAGTGAATCAAGCATAC TTCAGCAGGTAGAAGAAGTTGTTGTCATGCCAAACTATCACCGATTGTTCCCAGGTGGGGCCCGTAAGTTATTTAATATCTTTGGCAGCAGTTATTGCGA CGCAGCTGCCAAGCGACTAGCCTGCTGGATCTCTATCCAAAAGTGTGACAAGGATGGCGACAACAGGCTCCGGGTATGCCATTCAGCATGCCAGTCCTAT AATTTAGCTTGTGGAGCATCACTTGACTGCTCGGACCAAACCCTCTTTAGCAGCGAGGAGGAAGGTGACGTTCAGTGCACGGGCTCTGGGGAGATGAAAG TATCATGGTTTAATCGTCTGCGGAGTAGTTTGTTTTCAAGTAATACTTCGTCCGGAGGAATGTCTGTAAAATATAGGCATCTGTAG
AA sequence Show only first row Show all	>Potri.002G133300.1 pacid=42778105 polypeptide=Potri.002G133300.1.p locus=Potri.002G133300 ID=Potri.002G133300.1.v4.1 annot-version=v4.1 MEVFINKCSSCSVPRFDTKLKFTLVVFEIALILLCFLAINAESHDHQLQQQSAERGSENIISHSCIHDQIIEERKRPGRQVYSVTPQIYGQSGISKPLHR KGRALLGISESSLQQKDVKQPIRIFLNYDAVGHSPDRDCRKVGDIVKLGEPPVASRPGTPCNPHGDPPLYGDCWYNCTVDDISGKDKKHRLRKALGQTGD WFRRALAVEPVKGNLRLSGYSACGQDGGVQLPRGYVEEGVADADLVLLVTTRPTTGNTLAWAVACERDQWGRAVAGHVNVAPRHLTAEAETLLSATLIHE VMHVLGFDPHAFSHFRDDRKRRRSQVTEQLMDEKLGRMVTRVVLPRVVMHSRNHYGAFSENLTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVV SKMTLALLEDSGWYQANYSMADHLDWGRNQGTDFVTSPCNLWKGAYHCNATQLSGCTYNREAEGYCPIVSYTGDLPQWARYFPQANKGGQSSLADYCTYF VAYSDGSCTDTNSARAPDRMLGEVRGSSSRCMASSLVRTGFVRGSMTQGNGCYQHRCVNNSLEVAVDGIWKVCPEAGGPVQFPGFNGELICPAYQELCST GSVSVPGQCPSSCNFNGDCIDGRCHCFIGFHSHDCSKRFCPGNCNGQGKCLSNGICQCENGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTC QNSSTLLSSLSVCKNVLESDMSGQHCAPSESSILQQVEEVVVMPNYHRLFPGGARKLFNIFGSSYCDAAAKRLACWISIQKCDKDGDNRLRVCHSACQSY NLACGASLDCSDQTLFSSEEEGDVQCTGSGEMKVSWFNRLRSSLFSSNTSSGGMSVKYRHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42620			metalloendopeptidases;zinc ion...		Potri.002G133300 [exp]	0	1
AT5G43670			Sec23/Sec24 protein transport ...		Potri.008G161300 [exp]	3.87	0.8922
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.012G068600 [exp]	13.19	0.8665
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.006G154700 [exp]	13.41	0.8377
AT5G19390			Rho GTPase activation protein ...		Potri.001G275200 [exp]	17.83	0.8045
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.010G049100 [exp]	18.11	0.8490
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	20.29	0.8569
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.015G028101 [exp]	20.37	0.8508
AT3G28430			unknown protein		Potri.018G140800 [exp]	22.44	0.8325
AT1G16220			Protein phosphatase 2C family ...		Potri.001G473300 [exp]	22.58	0.8407
AT3G14172			unknown protein		Potri.003G070400 [exp]	25.09	0.8503

Compare expression of checked genes

Potri.002G133300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.