Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23790 289 / 2e-96 Protein of unknown function (DUF607) (.1) AT5G42610 287 / 4e-96 Protein of unknown function (DUF607) (.1) AT4G36820 275 / 6e-91 Protein of unknown function (DUF607) (.1) AT5G66650 243 / 2e-78 Protein of unknown function (DUF607) (.1) AT1G09575 137 / 4e-38 Protein of unknown function (DUF607) (.1) AT1G57610 132 / 7e-36 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G041000 [exp] 589 / 0 AT5G42610 288 / 3e-96 Protein of unknown function (DUF607) (.1) Potri.007G031400 [exp] 281 / 3e-93 AT2G23790 333 / 1e-113 Protein of unknown function (DUF607) (.1) Potri.005G127800 [exp] 268 / 4e-88 AT2G23790 335 / 2e-114 Protein of unknown function (DUF607) (.1) Potri.019G133400 [exp] 141 / 3e-39 AT1G09575 317 / 3e-108 Protein of unknown function (DUF607) (.1) Potri.013G161300 [exp] 141 / 4e-39 AT1G09575 316 / 8e-108 Protein of unknown function (DUF607) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010793 [exp] 347 / 6e-119 AT5G42610 270 / 2e-89 Protein of unknown function (DUF607) (.1) Lus10016305 [exp] 340 / 3e-116 AT2G23790 264 / 1e-86 Protein of unknown function (DUF607) (.1) Lus10022496 [exp] 272 / 3e-89 AT2G23790 371 / 2e-128 Protein of unknown function (DUF607) (.1) Lus10016799 [exp] 269 / 4e-88 AT2G23790 362 / 1e-124 Protein of unknown function (DUF607) (.1) Lus10000580 [exp] 254 / 8e-83 AT2G23790 314 / 1e-106 Protein of unknown function (DUF607) (.1) Lus10019663 [exp] 248 / 2e-80 AT2G23790 313 / 4e-106 Protein of unknown function (DUF607) (.1) Lus10034435 [exp] 150 / 3e-42 AT1G57610 335 / 6e-115 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10019127 [exp] 109 / 2e-27 AT1G57610 229 / 2e-75 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10005312 [exp] 48 / 2e-07 AT5G66650 70 / 5e-16 Protein of unknown function (DUF607) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04678 [poplar] [flax] MCU Mitochondrial calcium uniporter
Representative CDS sequence Show only first row Show all	>Potri.002G133400.1 pacid=42779439 polypeptide=Potri.002G133400.1.p locus=Potri.002G133400 ID=Potri.002G133400.1.v4.1 annot-version=v4.1 ATGGCGTTTCGAAAATTATTTTCGAAGCGTGCTGTGACCAACGATTATAGAGTTGCATCGCCGGCAGTAGCTCTAGATCACTCATCACCAATCAAATCTC TTACAACACCACAAAATAATGCAGCATCCAAAACGAAACTATTTAAAGAGTTTCTCACTGGAGATTCCGTCGATATAGGGTTTTTCCGGCGTTTCCTTCA CCGTAGAGCCATTAGCCAGTTACCCGAATTCATGTCCATGCCGGTGGGAGAGAAGTTAAGAGAAAAGCTCATTTCCGGTGACCGGCTCCACCTTGATGGT CTGACTCCTCCGGAAGAGATCGCTGGAGAGGCTAATAAGTTCGGGATTTCTGTTGAGAATGTGAAGAAGATCTTGAGGTTTTCTCTTGTGGAGAAGTTGA AGGCCAAACTTAGAGAGATTCCAAGAGGGTCGATTTGTTATTCGGAGTTTGTCAAAATTTGTGTTGATGAGTGTGGAAATGAAGGTCAAGGTGTTGAGTT TGCCAAGTTGCTTGATCAGTCCGGAAACGTCATCGTTTTAGGAAACATTGTGTTTCTCAGGCCTGAGCAGGTAGCGATATCAGTGGAGAATATGATATCC CAGACCATTGCAGCTCCTGATGATCCGAGAAGAAAACACCTTGAGCATATGGAGAAACTAAAGGTGATAATCGATCAGAAGGCTAGAACCCAGGTCCGAG GAGAGCTTTATTGTGGGCTGGGCTTTCTAATGATCCAGACACTTGGGTTCATGAGGCTCACCTTCTGGGAACTTAACTGGGATGTCATGGAGCCGATATG TTTCTTCGTCACCTCCCTTCACTTCGCAATAGCCTATGGTTTCTTCCTGAGAACATCCACTGAGCCCTCTTTTGAAGGTTACTTCCAGCAACGCTTCAAG GCCAAACAAAAGAAACTCATGAAGATCCATGGTTTTGATGTCCAAAAATATAACCAACTTCGCAAAGTTTTTTACCCTAACCTTGGTTATGGTTTACCAC AATCAGAATATTACAAACCCGGACACCATTAA
AA sequence Show only first row Show all	>Potri.002G133400.1 pacid=42779439 polypeptide=Potri.002G133400.1.p locus=Potri.002G133400 ID=Potri.002G133400.1.v4.1 annot-version=v4.1 MAFRKLFSKRAVTNDYRVASPAVALDHSSPIKSLTTPQNNAASKTKLFKEFLTGDSVDIGFFRRFLHRRAISQLPEFMSMPVGEKLREKLISGDRLHLDG LTPPEEIAGEANKFGISVENVKKILRFSLVEKLKAKLREIPRGSICYSEFVKICVDECGNEGQGVEFAKLLDQSGNVIVLGNIVFLRPEQVAISVENMIS QTIAAPDDPRRKHLEHMEKLKVIIDQKARTQVRGELYCGLGFLMIQTLGFMRLTFWELNWDVMEPICFFVTSLHFAIAYGFFLRTSTEPSFEGYFQQRFK AKQKKLMKIHGFDVQKYNQLRKVFYPNLGYGLPQSEYYKPGHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23790			Protein of unknown function (D...		Potri.002G133400 [exp]	0	1
AT4G26490			Late embryogenesis abundant (L...		Potri.011G165500 [exp]	2.44	0.8190
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Potri.018G113000 [exp]	9.16	0.8121
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	10.63	0.8236
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Potri.013G102600 [exp]	15.16	0.7965
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.010G223766 [exp]	20.78	0.7570
AT4G37250			Leucine-rich repeat protein ki...		Potri.005G142300 [exp]	22.62	0.8064
AT1G72010	TCP	TCP22	TCP family transcription facto...		Potri.019G081800 [exp]	23.45	0.7585
AT5G57970			DNA glycosylase superfamily pr...		Potri.003G182300 [exp]	25.88	0.6992
AT4G35920		MCA1	mid1-complementing activity 1,...		Potri.010G184700 [exp]	28.63	0.7227
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.001G073600 [exp]	30.39	0.7869

Compare expression of checked genes

Potri.002G133400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.