Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75060 311 / 2e-108 unknown protein AT1G19330 311 / 3e-108 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G041200 [exp] 434 / 6e-157 AT1G75060 317 / 3e-110 unknown protein Potri.003G130100 [exp] 182 / 2e-57 AT1G75060 178 / 8e-56 unknown protein Potri.001G101600 [exp] 180 / 9e-57 AT1G75060 178 / 7e-56 unknown protein Potri.005G088101 [exp] 51 / 8e-09 AT1G19330 55 / 9e-11 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032725 [exp] 305 / 4e-106 AT1G75060 286 / 1e-98 unknown protein Lus10018805 [exp] 300 / 1e-102 AT1G75060 288 / 5e-98 unknown protein Lus10017506 [exp] 189 / 5e-60 AT1G75060 178 / 6e-56 unknown protein Lus10028777 [exp] 187 / 2e-59 AT1G75060 179 / 2e-56 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13867 [poplar] [flax] SAP30_Sin3_bdg Sin3 binding region of histone deacetylase complex subunit SAP30
Representative CDS sequence Show only first row Show all	>Potri.002G133500.1 pacid=42778352 polypeptide=Potri.002G133500.1.p locus=Potri.002G133500 ID=Potri.002G133500.1.v4.1 annot-version=v4.1 ATGTTGGAGACAATGGAGAGTTCAGTGAATGGAGAAGGAGTTGTGGGAGGGTTTTCTCACTTACAGAGCTGCGGTGACAGTAGCGAAGAAGAGCTTTCTG TGCTGCCACGTCATACTAAAGTGGTGGTTACAGGAAATAACCGTACTAAGTCGGTGCTTGTGGGTCTTCAAGGTGTTGTGAAGAAGGCAGTTGGGCTTGG CGGGTGGCATTGGCTGGTCCTAACAAATGGCATAGAAGTAAAGCTACAGAGGAATGCTCTTAGTGTGATCGAGGCTCCCACAGGCAATGAGGAGGATGAT GATCTGGAATTTGAGAATGTGCAATGGAATGGATTGGATATGGGTGAGCTTGCATCCGATGACACACAAAAGTCCCATAGATCAAGGAATCGGACACACA AATCAACAGGATCATCTCACAAGACCATGAGCAGGTCTCTCTCTTGTGACTCGCAGTCTAAGGGCTCTATTTCCACACCTCGTGGGACCGCAAAGGTTGA CCTCAGCAAGTTGGAGGTGGCTGCACTGTGGAGATATTGGCGACACTTTAACCTTGTTGATTCCATTCCCAACCCATCCAAGGAGCAACTAATTGATGTT GTTCAGAGGCATTTTATGTCACAGCAAATGGACGAGTTGCAGGTCATTGTGGGATTTGTCAAAGCTGCAAAAAGACTGAAGACTGTCTGCAAATGA
AA sequence Show only first row Show all	>Potri.002G133500.1 pacid=42778352 polypeptide=Potri.002G133500.1.p locus=Potri.002G133500 ID=Potri.002G133500.1.v4.1 annot-version=v4.1 MLETMESSVNGEGVVGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDD DLEFENVQWNGLDMGELASDDTQKSHRSRNRTHKSTGSSHKTMSRSLSCDSQSKGSISTPRGTAKVDLSKLEVAALWRYWRHFNLVDSIPNPSKEQLIDV VQRHFMSQQMDELQVIVGFVKAAKRLKTVCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75060			unknown protein		Potri.002G133500 [exp]	0	1
AT1G75060			unknown protein		Potri.014G041200 [exp]	1.73	0.8565
AT4G38670			Pathogenesis-related thaumatin...		Potri.009G132200 [exp]	3.16	0.8407
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.010G195100 [exp]	3.87	0.8254
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.005G232600 [exp]	5.47	0.7934	GAL1.7
AT3G56810			unknown protein		Potri.016G024600 [exp]	5.47	0.8091
AT5G13760			Plasma-membrane choline transp...		Potri.001G261900 [exp]	6.32	0.8167
AT3G54400			Eukaryotic aspartyl protease f...		Potri.001G028200 [exp]	7.48	0.8239
AT3G48610		NPC6	non-specific phospholipase C6 ...		Potri.012G099300 [exp]	8.36	0.7950
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.017G068400 [exp]	9.38	0.8015
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.011G010500 [exp]	11.40	0.8022

Compare expression of checked genes

Potri.002G133500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.