Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47750 332 / 6e-116 PEX11A peroxin 11A (.1) AT3G47430 110 / 3e-29 PEX11B peroxin 11B (.1) AT1G01820 52 / 7e-08 PEX11C peroxin 11c (.1) AT2G45740 49 / 1e-06 PEX11D peroxin 11D (.1.2.3) AT3G61070 47 / 2e-06 PEX11E peroxin 11E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G042000 [exp] 472 / 4e-171 AT1G47750 327 / 8e-114 peroxin 11A (.1) Potri.003G108900 [exp] 118 / 2e-32 AT3G47430 324 / 1e-113 peroxin 11B (.1) Potri.001G124400 [exp] 117 / 5e-32 AT3G47430 329 / 1e-115 peroxin 11B (.1) Potri.002G153800 [exp] 49 / 6e-07 AT2G45740 400 / 1e-143 peroxin 11D (.1.2.3) Potri.014G076400 [exp] 48 / 2e-06 AT2G45740 392 / 4e-140 peroxin 11D (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003945 [exp] 370 / 2e-130 AT1G47750 322 / 8e-112 peroxin 11A (.1) Lus10029260 [exp] 363 / 1e-127 AT1G47750 318 / 4e-110 peroxin 11A (.1) Lus10038925 [exp] 119 / 9e-33 AT3G47430 321 / 3e-112 peroxin 11B (.1) Lus10027213 [exp] 59 / 1e-10 AT3G47430 200 / 8e-66 peroxin 11B (.1) Lus10041368 [exp] 51 / 3e-07 AT1G01820 416 / 1e-149 peroxin 11c (.1) Lus10036560 [exp] 49 / 7e-07 AT1G01820 416 / 2e-149 peroxin 11c (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05648 [poplar] [flax] PEX11 Peroxisomal biogenesis factor 11 (PEX11)
Representative CDS sequence Show only first row Show all	>Potri.002G134000.2 pacid=42779744 polypeptide=Potri.002G134000.2.p locus=Potri.002G134000 ID=Potri.002G134000.2.v4.1 annot-version=v4.1 ATGGATCCCAGGCCTTCACCAACTCCACAAAATTCCAATCAAACCCCCAATAAACCGAGACAAAGAGACTTTTTGAATCATTTAGAGGTTTACCTTGCAA AACGAGATGGGGTTGACAAGCTCCTCAAGATCTCACGTTACGCAACCAAGATCATCTTAGCTTCATCCCTCCTCCCGGAAACCTTAATCTTAACTAAACG ACTCAAGAGTTTCGAGTCAAGTGTTGGCCTCAGTCGCAAGGCATTTCGACTTGGGAAATTTGTTCAAGATGTGAACGCCTTGAGGGACTCTCCTTTTGAT ACAAAACAAGAAACCATACTCTCAATCATTGCATATGGAGGTGAGGGTTTGTATTATTTTGTTGAGCAGTTTGTTTGGTTGGCTAAATCGGGTTTGATTG ATAGCAAACACTCCAAAAGTTTAGGAAAAGTTAGTGCGTGGGCGGAGTTTGTTGGGTATATTGGGAGTATTTCTTTGAAATTTAGAGATTTGAAGAAATT GAGTGAAGACGAGGTGTGTCTGGAATCGAGCATTGGAGTTACTGTCACGAGAGGAGTTGGGTGTCAAGAGGGAGAGAGGAGATTGTGGAAGCTGAGAGAG AAGAAGTTGATGAAGAAATTATCTATTGTGCAGGATTTTGCTGATGGGTTAATGGCCTTGGCTGATATCCGTGACGGCAGAGGGCGATTTTCAGGGCCGC TTTTCATGTCTTGTGCAGGGCTTTTATCTGCTCTGATTAGTACTCGTAAGAATTGGGTCTCTTGCTGA
AA sequence Show only first row Show all	>Potri.002G134000.2 pacid=42779744 polypeptide=Potri.002G134000.2.p locus=Potri.002G134000 ID=Potri.002G134000.2.v4.1 annot-version=v4.1 MDPRPSPTPQNSNQTPNKPRQRDFLNHLEVYLAKRDGVDKLLKISRYATKIILASSLLPETLILTKRLKSFESSVGLSRKAFRLGKFVQDVNALRDSPFD TKQETILSIIAYGGEGLYYFVEQFVWLAKSGLIDSKHSKSLGKVSAWAEFVGYIGSISLKFRDLKKLSEDEVCLESSIGVTVTRGVGCQEGERRLWKLRE KKLMKKLSIVQDFADGLMALADIRDGRGRFSGPLFMSCAGLLSALISTRKNWVSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47750		PEX11A	peroxin 11A (.1)		Potri.002G134000 [exp]	0	1
AT3G28360		ABCB16, PGP16	ATP-binding cassette B16, P-gl...		Potri.001G417801 [exp]	1.41	0.8617
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.003G079800 [exp]	4.24	0.7741	HAT1.4
					Potri.009G170400 [exp]	6.16	0.8368
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Potri.007G126400 [exp]	7.21	0.7814	BIO2.1
AT3G46210			Ribosomal protein S5 domain 2-...		Potri.006G239100 [exp]	8.66	0.8136
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050120 [exp]	9.16	0.8109
					Potri.006G019550 [exp]	10.58	0.7368
AT3G11420			Protein of unknown function (D...		Potri.008G058900 [exp]	16.12	0.7402
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.004G127200 [exp]	17.66	0.7825
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G018500 [exp]	17.94	0.7954

Compare expression of checked genes

Potri.002G134000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.