Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1) AT2G45670 129 / 1e-32 calcineurin B subunit-related (.1.2) AT5G60620 50 / 2e-06 GPAT9 glycerol-3-phosphate acyltransferase 9 (.1) AT4G30580 44 / 0.0002 LPAT1, ATS2, EMB1995 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G042200 [exp] 673 / 0 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1) Potri.014G074300 [exp] 121 / 8e-30 AT2G45670 710 / 0.0 calcineurin B subunit-related (.1.2) Potri.002G151800 [exp] 119 / 7e-29 AT2G45670 716 / 0.0 calcineurin B subunit-related (.1.2) Potri.004G183300 [exp] 53 / 2e-07 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.009G143200 [exp] 52 / 3e-07 AT5G60620 679 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.006G183700 [exp] 46 / 3e-05 AT4G30580 388 / 2e-134 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003950 [exp] 533 / 0 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032706 [exp] 427 / 1e-148 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032707 [exp] 114 / 1e-30 AT1G80950 125 / 1e-35 Phospholipid/glycerol acyltransferase family protein (.1) Lus10015853 [exp] 120 / 2e-29 AT2G45670 672 / 0.0 calcineurin B subunit-related (.1.2) Lus10009312 [exp] 120 / 3e-29 AT2G45670 671 / 0.0 calcineurin B subunit-related (.1.2) Lus10036544 [exp] 117 / 2e-28 AT2G45670 692 / 0.0 calcineurin B subunit-related (.1.2) Lus10041384 [exp] 115 / 8e-28 AT2G45670 647 / 0.0 calcineurin B subunit-related (.1.2) Lus10014443 [exp] 49 / 6e-06 AT5G60620 617 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10023947 [exp] 49 / 6e-06 AT5G60620 655 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10036259 [exp] 43 / 0.0003 AT4G30580 340 / 6e-116 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G134100.1 pacid=42777882 polypeptide=Potri.002G134100.1.p locus=Potri.002G134100 ID=Potri.002G134100.1.v4.1 annot-version=v4.1 ATGGAAACCGAGCTCAAATCCATGAATCCGGACCCCCCCAAACCCGAACAACCCTACACGTCTTCCCGAGACGAAGGGTCCTACTCGAAAGACGACCGTC CGCTTCTTAAATCGGAACCGAACCGAGTCAACTCAGCGACAACCGAGAAGAACATTGAGGAGCTGGAGAAAAAATTCGCTGCATTCGTCCGCAGTGACGT GTACGGTCCGATGGGACGTGGGGAGTTACCATTGGTTGAGAAAGTTCTGTCAGCAATCGCGGTGGTTACACTGTTTCCGATACGATTCGTGCTCGCATTG GTTATATTGGTGGTGTATTATGTTATTTGTAGGGTTTGTACGCTGTTTTCGGCGCCGAATCGGGATGAGGAGGAGGAGCAGGAGGATTTTGCTCATATGG GAGGGTGGAGAAGGGCGGTTATTGTTTGGTGTGGGAGGTTTTTGTCTAGATTACTGCTTTTCGTGTTAGGGTTTTATTGGATTTGTGAAAGCTATAGAGA TATTGAACTGCCTAATCAAATTAAATCTTCCTCCCAGGTATATATATTTATTGCTGCTGCTGCTCTTCGTTATGTTTCGGTTTTTTTGGGAGCTAGTGTA AATAATGATTTGATAATGATTGTAGTGAATGAGGGAAAAGATCAATCTGAAGATCTGGAAAGATCAGGGGCGATAATATCAAATCATGTTTCGTATTTAG ATATCTTGTACCACATGTCTGCTTCTTTTCCAAGCTTTGTTGCCAAGAGATCAGTGGCTAAACTTCCTTTAGTTGGTCTCATCAGCAAGTGCCTTGGTTG TGTATATGTTCAGCGGGAGTCCAACTCATCTGACTTCAAGGGTGTTTCAGGCGTTGTGACTAAAAGAGTCAAAGAAGCTCACGAAAATAGATCTGCTCCA ATGATGATGCTTTTTCCAGAAGGCACGACAACAAATGGAGAGTTCCTTCTACCATTTAAGACAGGTGCATTCTTAGCAACAGCTCCTGTACATCCAGTGA TTCTTAGGTATCCGTACCAGCGATTCAGTCTTGCCTGGGATTCAATATCTGGGGCACGTCATGTTTTCTATCTTTTCTGTCAATTCATAAATCATATGGA AGCAATATGGCTTCCTGTTTACTACCCATCACAAGAAGAGAAGGATGATCCAAAGCTATATGCTAGCAATGTCCGACGGTTGATGACTTGTGAGAGTCAT TTAATAATGTCAGATATTGGACTTGCTGAGAAGCGAATATATCATGCTGCTCTGAATGGTTTGTTTTGA
AA sequence Show only first row Show all	>Potri.002G134100.1 pacid=42777882 polypeptide=Potri.002G134100.1.p locus=Potri.002G134100 ID=Potri.002G134100.1.v4.1 annot-version=v4.1 METELKSMNPDPPKPEQPYTSSRDEGSYSKDDRPLLKSEPNRVNSATTEKNIEELEKKFAAFVRSDVYGPMGRGELPLVEKVLSAIAVVTLFPIRFVLAL VILVVYYVICRVCTLFSAPNRDEEEEQEDFAHMGGWRRAVIVWCGRFLSRLLLFVLGFYWICESYRDIELPNQIKSSSQVYIFIAAAALRYVSVFLGASV NNDLIMIVVNEGKDQSEDLERSGAIISNHVSYLDILYHMSASFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESNSSDFKGVSGVVTKRVKEAHENRSAP MMMLFPEGTTTNGEFLLPFKTGAFLATAPVHPVILRYPYQRFSLAWDSISGARHVFYLFCQFINHMEAIWLPVYYPSQEEKDDPKLYASNVRRLMTCESH LIMSDIGLAEKRIYHAALNGLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80950			Phospholipid/glycerol acyltran...		Potri.002G134100 [exp]	0	1
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Potri.003G186600 [exp]	7.74	0.7008	RAD23.2
AT3G06700			Ribosomal L29e protein family ...		Potri.002G196800 [exp]	43.26	0.6671
AT1G64760			O-Glycosyl hydrolases family 1...		Potri.019G032900 [exp]	60.09	0.6716
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.001G273700 [exp]	68.58	0.6697
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.010G146500 [exp]	71.33	0.6509
AT1G08360			Ribosomal protein L1p/L10e fam...		Potri.004G202766 [exp]	77.76	0.6040
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Potri.013G054100 [exp]	86.74	0.6067
AT3G11760			unknown protein		Potri.016G067600 [exp]	120.93	0.6017
AT5G20180			Ribosomal protein L36 (.1.2)		Potri.006G069000 [exp]	147.78	0.5759
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.007G129700 [exp]	152.70	0.6108

Compare expression of checked genes

Potri.002G134100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.