Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19360 621 / 0 RRA3 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75110 598 / 0 RRA2 REDUCED RESIDUAL ARABINOSE 2, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75120 518 / 0 RRA1 REDUCED RESIDUAL ARABINOSE 1, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G70630 63 / 2e-10 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 62 / 3e-10 XEG113 xyloglucanase 113 (.1) AT4G01750 52 / 3e-07 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT4G19970 48 / 1e-05 unknown protein AT4G01220 47 / 2e-05 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) AT4G01770 46 / 3e-05 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1) AT1G56550 45 / 6e-05 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G042700 [exp] 770 / 0 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.009G113300 [exp] 624 / 0 AT1G19360 655 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G186800 [exp] 61 / 7e-10 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.004G235800 [exp] 56 / 3e-08 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.002G166000 [exp] 47 / 1e-05 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.012G112600 [exp] 44 / 0.0002 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G092400 [exp] 43 / 0.0003 AT4G01220 530 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.010G099400 [exp] 42 / 0.0007 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 42 / 0.001 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018812 [exp] 671 / 0 AT1G19360 636 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032710 [exp] 660 / 0 AT1G19360 629 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10026327 [exp] 593 / 0 AT1G19360 610 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10042340 [exp] 591 / 0 AT1G19360 603 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036860 [exp] 64 / 4e-11 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10006212 [exp] 60 / 2e-09 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10027804 [exp] 56 / 3e-08 AT2G35610 927 / 0.0 xyloglucanase 113 (.1) Lus10041976 [exp] 55 / 5e-08 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10005034 [exp] 54 / 1e-07 AT2G35610 886 / 0.0 xyloglucanase 113 (.1) Lus10041973 [exp] 53 / 2e-07 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03407 [poplar] [flax] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Potri.002G134400.1 pacid=42780232 polypeptide=Potri.002G134400.1.p locus=Potri.002G134400 ID=Potri.002G134400.1.v4.1 annot-version=v4.1 ATGGCTGTTCCTCGAAGAGATAAAGGGCAATCACTTAGCGGATCTCGAATCGCCTTAGCCGTTGTGGTTGGTGTTCTTCTTGGCTTCGTCTTTTCTGTGT TATATCCTCATGGGTTCTTCAGCTCCGATCTGGCTAACCCACATCGTCGGATTGCTAATTCTAATCTCCAGACTGGCTCATCTTCATGTGAATCACCAGA GCGAATTAAAATGCTGAAAGCTGATATTGTGTCGATATCAGAGAAGAATGCTGAGTTGAAGAAGCAAGTTAGGGAGCTAAATGAAAAGCTGCAGCTGGCG GAACAAGGGCAAGATCATGCTCAGAAGCAGGTTTTGTTACTGGGTAAACAGCAGAAAGCTGGTCCTTTTGGTACCGTCAAGGGTTTGAGAACTAACCCAA CTGTTGTTCCTGATGAGTCTGTGAATGCTAGACTGGCAAAACTCTTGGCGGAAGTTGCTGTACATAAGGAGCTCATTGTTGCACTTGCAAATTCAAATGT GAAAGCCATGTTAGAAGTCTGGTTCACTAACATCAAGAAAGCTGGTATACGCAATTACCTTGTTGTAGCATTAGATGACCATATTGTAGATTTCTGCAAG TCAAATGATGTTCCAGTGTATAAGAGGGATCCGGATAGCGGTATTGATTCGGTTGCAAGAACAGGTGGTAATCATGCTGTTTCTGGATTGAAGTTCCATA TTTTGAGGGAATTTTTGCAGCTGGGTTACAGTGTTCTTCTGTCAGATATTGATATAATATACTTGCAGAACCCATTTGATCATCTTTATCGTGATTCAGA TGTTGAATCTATGTCTGATGGCCACGATAATATGACAGCTTATGGATTTAATGATGTCTTTGATGAACCTGCCATGGGTTGGGCTCGTTATGCTCATACA ATGAGGATATGGGTTTACAATTCTGGATTCTTTTATATAAGGCCTACACTTCCTTCCATTGAGCTTTTGGATCGTGTTGCTGGTCGTTTGTCTAGAGAGC CAAACTCATGGGACCAAGCAGTTTTCAATGAGGAGCTTTTCTACCCTTCACATCCTGGGTATGACGGGCTCCATGCTGCAAAAAGAACAATGGATATATT TTTGTTTATGAACAGTAAGGTCCTTTTCAAGACAGTAAGGAAAGACCCCGCGTTGAAAAAGTTGAAGCCAGTAATTGTTCATGTAAACTACCACCCAGAT AAACTTAGAAGAATGCAAGCAGTTGTGGAGTTCTATGTTAATGGGAAGAAAGATGCATTGGATCCTTTCCCTGATGGTTCTGATTGGTAG
AA sequence Show only first row Show all	>Potri.002G134400.1 pacid=42780232 polypeptide=Potri.002G134400.1.p locus=Potri.002G134400 ID=Potri.002G134400.1.v4.1 annot-version=v4.1 MAVPRRDKGQSLSGSRIALAVVVGVLLGFVFSVLYPHGFFSSDLANPHRRIANSNLQTGSSSCESPERIKMLKADIVSISEKNAELKKQVRELNEKLQLA EQGQDHAQKQVLLLGKQQKAGPFGTVKGLRTNPTVVPDESVNARLAKLLAEVAVHKELIVALANSNVKAMLEVWFTNIKKAGIRNYLVVALDDHIVDFCK SNDVPVYKRDPDSGIDSVARTGGNHAVSGLKFHILREFLQLGYSVLLSDIDIIYLQNPFDHLYRDSDVESMSDGHDNMTAYGFNDVFDEPAMGWARYAHT MRIWVYNSGFFYIRPTLPSIELLDRVAGRLSREPNSWDQAVFNEELFYPSHPGYDGLHAAKRTMDIFLFMNSKVLFKTVRKDPALKKLKPVIVHVNYHPD KLRRMQAVVEFYVNGKKDALDPFPDGSDW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19360		RRA3	reduced residual arabinose 3, ...		Potri.002G134400 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.003G201900 [exp]	2.00	0.7651
AT3G47370			Ribosomal protein S10p/S20e fa...		Potri.002G116900 [exp]	3.74	0.7530
AT1G31910			GHMP kinase family protein (.1...		Potri.003G098100 [exp]	10.48	0.6397
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Potri.013G085201 [exp]	12.64	0.7103
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.001G285100 [exp]	16.12	0.6614
AT1G47578			Biotin/lipoate A/B protein lig...		Potri.002G131000 [exp]	19.67	0.7067
AT5G23300		PYRD	pyrimidine d (.1)		Potri.007G074201 [exp]	20.61	0.7215
AT1G72930		TIR	toll/interleukin-1 receptor-li...		Potri.005G004000 [exp]	20.83	0.6907
AT4G26840		ATSUMO1, SUMO1,...	ARABIDOPSIS THALIANA SMALL UBI...		Potri.002G224700 [exp]	24.61	0.7153	Pt-SUM1.1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050120 [exp]	27.78	0.7289

Compare expression of checked genes

Potri.002G134400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.