Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26667 345 / 9e-123 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G60180 308 / 4e-108 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G25280 241 / 7e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G60961 207 / 3e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47840 100 / 1e-25 AMK2 adenosine monophosphate kinase (.1) AT5G35170 98 / 1e-23 adenylate kinase family protein (.1.2) AT5G63400 86 / 1e-20 ADK1 adenylate kinase 1 (.1.2) AT2G37250 84 / 3e-19 ADK, ATPADK1 adenosine kinase (.1) AT5G50370 83 / 3e-19 Adenylate kinase family protein (.1) AT2G39270 76 / 1e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043300 [exp] 375 / 2e-134 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G104700 [exp] 283 / 7e-98 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G129000 [exp] 243 / 8e-82 AT4G25280 301 / 6e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G078200 [exp] 95 / 2e-23 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.013G103400 [exp] 94 / 5e-23 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.008G046100 [exp] 91 / 7e-22 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.018G113400 [exp] 92 / 8e-22 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.010G215300 [exp] 86 / 3e-20 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.015G092800 [exp] 82 / 5e-19 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031611 [exp] 357 / 4e-127 AT5G26667 343 / 1e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10033733 [exp] 357 / 3e-126 AT5G26667 336 / 2e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10031714 [exp] 240 / 5e-75 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019509 [exp] 220 / 8e-74 AT5G26667 217 / 5e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10031135 [exp] 221 / 2e-73 AT4G25280 263 / 3e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037995 [exp] 96 / 9e-25 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10009228 [exp] 97 / 3e-24 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1) Lus10003504 [exp] 96 / 3e-24 AT5G47840 300 / 1e-102 adenosine monophosphate kinase (.1) Lus10009478 [exp] 89 / 2e-22 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10036326 [exp] 92 / 2e-21 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13238 [poplar] [flax] AAA_18 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.002G134600.8 pacid=42777400 polypeptide=Potri.002G134600.8.p locus=Potri.002G134600 ID=Potri.002G134600.8.v4.1 annot-version=v4.1 ATGGGAAGTGTTAGTGATGCTGAGAAGAAGCCTGCTGTTATTTTTGTTTTGGGTGGCCCTGGCAGTGGAAAGGGTACCCAGTGTGCCAATGTTGTTGAAC ACTTTGGTTACACTCATCTCAGTGCTGGAGATCTTCTTCGAGCAGAAATTAAATCTGGCTCTGAAAATGGAACCATGATTCAGAACATGATTAAGGAGGG AAAGATAGTGCCTTCAGAGGTAACAATAAAGCTCCTCCAAAAAGCAATGCAGGAAAGTGGAAATGACAAATTTCTGATTGATGGTTTTCCCCGCAATGAG GAAAACCGAGCTGCGTTTGAGGCTGTTACCAAAATTGAACCAGCATTTGTCCTGTTCTTTAATTGTCCTGAAGAGGAGATGGAGAAGCGCATTTTGAGCA GGAACCAGGGAAGAGAAGATGATAACATTGAAACTATAAGGAAGCGGTTTAATGTTTTTCTAGAGTCCAGTCTTCCTGTGGTTGAGTACTATGACTCAAA GGGGAAAGTTAGGAAGGTTGATGCGGCAAAGTCTGTTGAAGAGGTTTTTGAGGCAGTTAAAGCCATCTTTACACCAAAAGAGGAGAAGGTAATTGCTGCA TAA
AA sequence Show only first row Show all	>Potri.002G134600.8 pacid=42777400 polypeptide=Potri.002G134600.8.p locus=Potri.002G134600 ID=Potri.002G134600.8.v4.1 annot-version=v4.1 MGSVSDAEKKPAVIFVLGGPGSGKGTQCANVVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNE ENRAAFEAVTKIEPAFVLFFNCPEEEMEKRILSRNQGREDDNIETIRKRFNVFLESSLPVVEYYDSKGKVRKVDAAKSVEEVFEAVKAIFTPKEEKVIAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26667		PYR6	P-loop containing nucleoside t...		Potri.002G134600 [exp]	0	1
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.008G180600 [exp]	1.41	0.9320
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Potri.014G141700 [exp]	1.41	0.9428	Pt-ARPC1.1
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.013G006250 [exp]	2.44	0.9297
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Potri.001G185300 [exp]	5.65	0.9107
AT5G21070			unknown protein		Potri.009G158800 [exp]	6.70	0.9190
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.005G226400 [exp]	9.38	0.9193	NAP4.2
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Potri.006G077900 [exp]	10.19	0.9170	PBA1.2
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.001G108700 [exp]	11.83	0.9140
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.009G047300 [exp]	11.95	0.9127
AT2G26680			unknown protein		Potri.002G119800 [exp]	13.03	0.8556

Compare expression of checked genes

Potri.002G134600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.