Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39445 222 / 5e-75 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1) AT1G61280 181 / 3e-59 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043400 [exp] 226 / 5e-77 AT1G61280 159 / 7e-51 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003796 [exp] 197 / 4e-65 AT2G39445 187 / 5e-61 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1) Lus10010489 [exp] 188 / 2e-61 AT2G39445 184 / 2e-59 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08510 [poplar] [flax] PIG-P PIG-P
Representative CDS sequence Show only first row Show all	>Potri.002G134800.1 pacid=42777315 polypeptide=Potri.002G134800.1.p locus=Potri.002G134800 ID=Potri.002G134800.1.v4.1 annot-version=v4.1 ATGCAAGGCACGGAAGATCTGCATTCGGTGAGTAGTCCTAGGAGAGTGCTTAGTTTTTCAAAGAGGAGGAAGGCGACTGTATCCTTTCTTGATCCCGATG ACAAAGCTGCTTCTGGGTTTGGTGTGTCTGGAGATCATGGCCCCAAATCCTCTGAAGTTTATGGTTTTGTAGGCTCCATTACTACCGTTGTTGCCACAGC TATTTTCTTTGTATGGGCATATGTTCCTGAAAATTGGTTGCAGGCAATTGGAATCTTTTACTATCCCAACAAGTACTGGGCATTGGCTGTGCCAACCTAT GGCATGGTGACAATCTTATTAGCTCTGCTATTTTACGTTGGTCTCAACTTCATGTCAACCCCACCCCCTACTTCCTTGAATACAATCTTCGATGAGTTCA GTAGGGAACCTTCAACATTCATTCCATCGCTGGAGGGAGATGAGCAGCCCATTGAACCCATATCTGATATTGGCATCAATAAAATCAATGATCTCATGTT TAATGATGTGAAGTAA
AA sequence Show only first row Show all	>Potri.002G134800.1 pacid=42777315 polypeptide=Potri.002G134800.1.p locus=Potri.002G134800 ID=Potri.002G134800.1.v4.1 annot-version=v4.1 MQGTEDLHSVSSPRRVLSFSKRRKATVSFLDPDDKAASGFGVSGDHGPKSSEVYGFVGSITTVVATAIFFVWAYVPENWLQAIGIFYYPNKYWALAVPTY GMVTILLALLFYVGLNFMSTPPPTSLNTIFDEFSREPSTFIPSLEGDEQPIEPISDIGINKINDLMFNDVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39445			Phosphatidylinositol N-acetylg...		Potri.002G134800 [exp]	0	1
AT5G59140			BTB/POZ domain-containing prot...		Potri.009G037800 [exp]	1.00	0.8122
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Potri.014G138800 [exp]	2.82	0.7668	GPX4.1,PtrcGpx4
AT4G08230			glycine-rich protein (.1.2)		Potri.002G086600 [exp]	3.16	0.8093
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Potri.014G153800 [exp]	6.32	0.7478
AT3G11530			Vacuolar protein sorting 55 (V...		Potri.006G209100 [exp]	6.70	0.7343
AT1G54210		ATATG12, APG12,...	AUTOPHAGY 12 A, AUTOPHAGY 12, ...		Potri.001G169700 [exp]	8.12	0.7462
AT3G59600		NRPE8B, NRPD8B,...	RNA polymerase Rpb8 (.1)		Potri.013G120500 [exp]	10.48	0.7209	Pt-ATRPABC16.2
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Potri.001G442400 [exp]	10.95	0.8006	LSD1.1
AT2G04340			unknown protein		Potri.014G169500 [exp]	14.00	0.7137
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Potri.009G044500 [exp]	15.09	0.7169	ATPH1.1

Compare expression of checked genes

Potri.002G134800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.