Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80770 576 / 0 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G50920 117 / 4e-28 Nucleolar GTP-binding protein (.1) AT1G10300 115 / 2e-27 Nucleolar GTP-binding protein (.1) AT1G07615 53 / 3e-07 GTP-binding protein Obg/CgtA (.1) AT5G18570 53 / 4e-07 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G72660 45 / 0.0001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G17470 45 / 0.0001 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT4G39520 42 / 0.0007 GTP-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258900 [exp] 125 / 6e-31 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1) Potri.009G054000 [exp] 125 / 7e-31 AT1G50920 1048 / 0.0 Nucleolar GTP-binding protein (.1) Potri.001G239600 [exp] 55 / 7e-08 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.010G022400 [exp] 53 / 4e-07 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.002G029600 [exp] 50 / 2e-06 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.003G063500 [exp] 45 / 9e-05 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G170300 [exp] 45 / 0.0001 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.007G080900 [exp] 42 / 0.0007 AT4G39520 647 / 0.0 GTP-binding protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019508 [exp] 604 / 0 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043354 [exp] 587 / 0 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10007959 [exp] 126 / 7e-33 AT1G50920 498 / 2e-174 Nucleolar GTP-binding protein (.1) Lus10027370 [exp] 130 / 2e-32 AT1G50920 1034 / 0.0 Nucleolar GTP-binding protein (.1) Lus10002558 [exp] 130 / 3e-32 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1) Lus10038748 [exp] 122 / 1e-29 AT1G50920 940 / 0.0 Nucleolar GTP-binding protein (.1) Lus10039110 [exp] 97 / 2e-22 AT1G50920 489 / 1e-170 Nucleolar GTP-binding protein (.1) Lus10034166 [exp] 53 / 3e-07 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 53 / 4e-07 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10040813 [exp] 50 / 2e-06 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06858 [poplar] [flax] NOG1 Nucleolar GTP-binding protein 1 (NOG1)
Representative CDS sequence Show only first row Show all	>Potri.002G134900.1 pacid=42779491 polypeptide=Potri.002G134900.1.p locus=Potri.002G134900 ID=Potri.002G134900.1.v4.1 annot-version=v4.1 ATGAGTCGTGCCTGTTGTCTCTCGCAGCTATTGCAGATTCCTTCAACCAAGATTCTTCCTAACACCTCCAAGTTTTCCAAGGGTTTATATGTGAAAGCAG GAGCAACAAAGTATCCAAATTTATGCTTTTATAGAAATGTTCAGACTGTCACTTATGCAATTGTCGATGGAAGCTATGTACCCACTACCACTCAAACACA TCAACCTGACAAAACTAAGGAAAATGAATCAACAAAACTTGAAAGTGTTGGTGCATTTCAAAAGCTACCAATGGTGATGCCATCGGTTGATATACTTTAT TCAGCATTGAGGAAGGCCAAGAGAGTGCCACCCACAAAAGGCATAGCTAATATTGCAAAACGAGAGAGAAATAGAGGGGCAAAGCAACTTGATGCACTGA TGAAAGAATTGGCAGTTCCACTGAGAGAGTACATGGAGAATTTCCCTAAAAAGAAGTATTTGCATCCTTATGAACGATCACTTATTGAGTTGACCCTTGG GGATGGAAATTATGAAGAGGTTCTGAGAAAAGTTGATGCTCTGAGGAAGAAGGTGGTAGGTGTTGGAAAGGAATGTGCTTCTCTCTGTGCTAAGTCTTCA ACAAAACGAGATGCTGGGGAGCGGTTGAATGAGGGTCTGGAAAAGCTTGAAGAAGTTTTTAAATGTGAAGGAAAGGCAGTTGATGATTTATTGAACATTG CCAAGACTTTGCGGGCTATGCCAGTGGTTGATCTGGAAACACCTACTCTTTGTCTTGTTGGAGCTCCTAATGTTGGAAAGTCATCCTTGGTTCGTGTGCT CTCAACAGGGAAGCCTGAGGTCTGCAACTATCCTTTCACAACTAGAGGAATTCTAATGGGCCACATTGCTCTAAATTTCCAGCATTTTCAGGTGACAGAC ACCCCTGGGCTACTGAAGAGATGTGATGAGGACAGGAACAATTTGGAAAAATTGACACTTGCTGTCCTCTCACATTTGCCAACTGCAATACTTTATGTAC ATGATCTCACCGGAGAATGTGGAACCTCACCTTCTGATCAGTTTGTCATATACAAAGAAATTAAACAGAGGTTCAGCAATCATCTCTGGCTTGATGTTGT TTCTAAATGTGATATCTTGCAAGAGGCTCCTGTGATCTTTATCATGGAAGATAGCGACACTGATAACCCTGAACTGGAAAGGTATCGAAAAAAGGGACCT GAAGGAGCAATTCTAGTGTCGGTAAAGGATGGAAAGGGGCTTGATGAGTTGAAAGTTCAAGTGCATGAGCTGCTGGTCACCCAGATGGATAGGATCCGAA GCTCAAAGATTGATGAAGATAATCCAGAGCTAGTTACATGA
AA sequence Show only first row Show all	>Potri.002G134900.1 pacid=42779491 polypeptide=Potri.002G134900.1.p locus=Potri.002G134900 ID=Potri.002G134900.1.v4.1 annot-version=v4.1 MSRACCLSQLLQIPSTKILPNTSKFSKGLYVKAGATKYPNLCFYRNVQTVTYAIVDGSYVPTTTQTHQPDKTKENESTKLESVGAFQKLPMVMPSVDILY SALRKAKRVPPTKGIANIAKRERNRGAKQLDALMKELAVPLREYMENFPKKKYLHPYERSLIELTLGDGNYEEVLRKVDALRKKVVGVGKECASLCAKSS TKRDAGERLNEGLEKLEEVFKCEGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVLSTGKPEVCNYPFTTRGILMGHIALNFQHFQVTD TPGLLKRCDEDRNNLEKLTLAVLSHLPTAILYVHDLTGECGTSPSDQFVIYKEIKQRFSNHLWLDVVSKCDILQEAPVIFIMEDSDTDNPELERYRKKGP EGAILVSVKDGKGLDELKVQVHELLVTQMDRIRSSKIDEDNPELVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80770		PDE318	pigment defective 318, P-loop ...		Potri.002G134900 [exp]	0	1
AT1G36320			unknown protein		Potri.005G170400 [exp]	2.44	0.9393
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144700 [exp]	2.82	0.9120
AT4G23950			Galactose-binding protein (.1....		Potri.001G089700 [exp]	6.48	0.9091
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Potri.013G065700 [exp]	9.11	0.8672
AT2G43180			Phosphoenolpyruvate carboxylas...		Potri.002G231000 [exp]	9.94	0.9056
AT4G09730		RH39	RH39 (.1)		Potri.005G198300 [exp]	9.94	0.9032
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099200 [exp]	12.24	0.9236
AT5G12890			UDP-Glycosyltransferase superf...		Potri.001G016300 [exp]	12.96	0.9079
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Potri.002G193900 [exp]	13.78	0.8817
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.014G135200 [exp]	18.97	0.8825	Pt-DEGP2.2

Compare expression of checked genes

Potri.002G134900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.