Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38740 176 / 6e-55 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043500 [exp] 264 / 5e-89 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G086900 [exp] 210 / 1e-68 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147300 [exp] 208 / 1e-67 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147400 [exp] 194 / 5e-62 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003018 [exp] 176 / 3e-54 AT2G38740 355 / 1e-124 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10040116 [exp] 172 / 2e-53 AT2G38740 347 / 3e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10030930 [exp] 117 / 8e-33 AT2G38740 222 / 5e-74 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10030929 [exp] 82 / 8e-20 AT2G38740 165 / 1e-52 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018906 [exp] 50 / 5e-07 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10028605 [exp] 46 / 1e-05 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.002G135000.2 pacid=42777015 polypeptide=Potri.002G135002.1.p locus=Potri.002G135000 ID=Potri.002G135000.2.v4.1 annot-version=v4.1 ATGATATCCTTCGCTTCCATCAAGAACCACCACCACCACCACCCCCTTCTTTTCTGCGCATCTCCATCAAACTATAACCTACACACCAGACGGCTTCAAA TATGTTCTCTGTCCTCTGTTGCTCCTTTGGAAGCAATGCTTTTCGACATTGATGGAACATTGCGTGACTCAGATCCTCTCCATTTGTATGCTTTTCGCGA AATGCTTCGAACTCCCATCACCGAGGAATTTTTCATCGAAAATATTAGTGGTAGGCATAATGAAGATCTGTGCCACATCCTCCTTTCTGATTGGGAAATC CAAAGATCCCGAAAGTTTATGGAAGATCAAGAAGCTATGTTTCAAAGGGCTTGCAAAAGTTGCGCAAATGGATCGAGGATTGCCGGTTTGAGAAGAGCTG CTGTTACTAATGCTCCAATATCAGATGCTGAGCTTTTAGCATCTATGTTAGGTCTGTCAGATTCCTTCGAAATTCTTGTTATTGGGAATGAATGTGACCG AGCAAAACCATTTCCTGACCCGTACCTGAAAGCTCTCCAAACACCTGACATTTCACATAAGCATGCTTTTGACTCTGTTTCAGGGATGGCAGCTGGGATG CCGGTAGTGGGGTTAGGTACTAGGAACCCTGAACAATTATTGACAGAAGCTACTTTTGTTGTTTAA
AA sequence Show only first row Show all	>Potri.002G135000.2 pacid=42777015 polypeptide=Potri.002G135002.1.p locus=Potri.002G135000 ID=Potri.002G135000.2.v4.1 annot-version=v4.1 MISFASIKNHHHHHPLLFCASPSNYNLHTRRLQICSLSSVAPLEAMLFDIDGTLRDSDPLHLYAFREMLRTPITEEFFIENISGRHNEDLCHILLSDWEI QRSRKFMEDQEAMFQRACKSCANGSRIAGLRRAAVTNAPISDAELLASMLGLSDSFEILVIGNECDRAKPFPDPYLKALQTPDISHKHAFDSVSGMAAGM PVVGLGTRNPEQLLTEATFVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.002G135000 [exp]	0	1
					Potri.018G112701 [exp]	2.00	0.8989
AT1G06330			Heavy metal transport/detoxifi...		Potri.011G065600 [exp]	8.48	0.8249
AT5G44440			FAD-binding Berberine family p...		Potri.011G162800 [exp]	9.53	0.8249
					Potri.010G171350 [exp]	15.58	0.7736
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.010G061200 [exp]	18.57	0.8457
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Potri.017G137100 [exp]	21.33	0.7331
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061301 [exp]	23.45	0.8083
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239300 [exp]	32.83	0.7987
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Potri.008G210300 [exp]	38.47	0.8239
AT3G21410			F-box and associated interacti...		Potri.005G114900 [exp]	42.84	0.8017

Compare expression of checked genes

Potri.002G135000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.