Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13560 1007 / 0 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT4G00570 739 / 0 NAD-ME2 NAD-dependent malic enzyme 2 (.1) AT5G25880 390 / 2e-128 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT2G19900 380 / 2e-124 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT1G79750 375 / 1e-121 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT5G11670 371 / 5e-121 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043700 [exp] 1160 / 0 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G156000 [exp] 768 / 0 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 763 / 0 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.018G046600 [exp] 387 / 3e-127 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G086700 [exp] 385 / 2e-126 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.006G236500 [exp] 385 / 2e-126 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.003G049300 [exp] 375 / 1e-121 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 368 / 4e-119 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018939 [exp] 1059 / 0 AT2G13560 1081 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10028642 [exp] 1052 / 0 AT2G13560 1075 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10011772 [exp] 784 / 0 AT2G13560 827 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10009822 [exp] 779 / 0 AT4G00570 1028 / 0.0 NAD-dependent malic enzyme 2 (.1) Lus10040930 [exp] 763 / 0 AT4G00570 1011 / 0.0 NAD-dependent malic enzyme 2 (.1) Lus10025823 [exp] 389 / 4e-127 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10043025 [exp] 388 / 7e-127 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 378 / 3e-124 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10011125 [exp] 350 / 3e-113 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005484 [exp] 344 / 6e-111 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [poplar] [flax] AA_dh_N PF00390 [poplar] [flax] malic Malic enzyme, N-terminal domain CL0063 [poplar] [flax] NADP_Rossmann PF03949 [poplar] [flax] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G135300.1 pacid=42777931 polypeptide=Potri.002G135300.1.p locus=Potri.002G135300 ID=Potri.002G135300.1.v4.1 annot-version=v4.1 ATGCCGAATTTTTCCAATCAGATCAGAGCGTCGTCGTCTCTGATTAAACGGCTCAAACAAAGAATGACGAATCCGGCGGCTCTGATGCAGGCTACTAGAT CTTTCACTACATTGGAGGGTCACCGTCCTACCATTGTTCATAAACGGAGCCTTGATATTCTACACGATCCATGGTTCAACAAGGGGACAGCGTTTTCTAT GACGGAACGCGACCGTCTTGATATACGGGGACTTCTTCCTCCCAATGTTATGTCTTCTGAACAGCAAATTCAACGCTTCATGGTTGACTTGAAGAGGCTT GAAGTGCAAGCAAGAGACGGACCATCTGATCCAAATGCGCTGGCCAAGTGGCGGATACTTAATCGATTACATGATAGAAATGAAACTATGTACTTTAAGG TTCTAATTGCCAATATCGAGGAATATGCACCCATAGTCTATACCCCAACTGTTGGTCTTGCTTGCCAAAATTACAGTGGTTTGTTTAGAAGACCAAGGGG AATGTATTTCAGTGCTGAAGACCGTGGAGAAATGATGTCCATGGTGTATAACTGGCCAGCCGAGCAGGTTGACATGATTGTTGTTACGGATGGAAGCAGG ATATTGGGTCTTGGAGATCTTGGAGTTCAAGGAATTGGTATTGCTATTGGAAAGCTAGATCTGTATGTCGCTGCTGCAGGGATAAATCCTCAAAGGGTGC TTCCTGTCATGATTGATGTTGGAACTAACAATGAGAAATTGCTCAAAGACCCCTTGTATCTGGGATTGCAAGAACACCGTCTTGACGGTGATGAGTACAT TGCAGTCATTGATGAATTCATGGAGGCAGTGTTTACTCGCTGGCCACATGTGATTGTGCAGTTTGAAGATTTCCAGAGTAAGTGGGCATTCAAGTTGTTG CAGCGATATAGGAATGCCTACAGAATGTTCAACGATGATGTCCAGGGAACGGCAGGGGTTGCTATAGCTGGTCTTTTAGGAGCTGTAAGAGCACAAGGAA GGCCAATGATTGATTTCCCCAAGCAAAAGATTGTTGTTGCTGGTGCTGGAAGTGCAGGAATAGGGGTTCTCAATGCTGCCAGGAAAACCATGGCTAGAAT GCTTGGAAATAATGAATCTGCTTTTGAAAGTGCAGGAAGACAGTTCTGGGTAGTTGATGCTAAGGGACTTATTACAGAGGAACGTGAAAATATTGATCTG GAAGCTCTGCCATTTGCAAGGAAGGTCGAAGAAGCTAGTCGTCAAGGATTAAGGGAAGGTGCAAGTCTTGCAGAAGTGGTGCGAGAAGTGAAGCCTGATG TGCTTCTTGGATTATCTGCAGTTGGGGGTTTGTTTTCGAAGGAGGTATTAGAAGCCCTCAAAGGTTCGACTTCGACTAGACCAGCCATCTTTGCCATGTC AAATCCCACAAAAAATGCTGAATGCACTCCTGAAGAAGCGTTTTCCATTGTGGGTGACAATATTATTTTTGCTAGTGGAAGTCCATTCAAAGATGTGGAT CTTGGAAATGGTCATATTGGCCACTGCAACCAGGGAAACAACATGTATCTCTTTCCAGGAATCGGACTTGGGACTCTACTTTCTGGGTCTAGGATCATCT CTGATGGCATGCTACAGGCTGCAGCTGAATGCTTAGCTGCGTATATGACAGAAGAGGAGGTTCTAAAAGGGATCATATACCCTTCGACATCTAGAATACG AGATATAACAAAGGAAGTAGCTGCAGCTGTGGTGAAGGAAGCCATAGAAGAGGATCTTGCAGAAGGATACCGTGAAATGGACGCTAGAGAGCTCCGAAAA CTCAGCCAGGAGGAAATTGAAGAATATGTCAAGAATAACATGTGGAGTCCAGATTACCCAACACTGGTCTATAAGAAAGATTGA
AA sequence Show only first row Show all	>Potri.002G135300.1 pacid=42777931 polypeptide=Potri.002G135300.1.p locus=Potri.002G135300 ID=Potri.002G135300.1.v4.1 annot-version=v4.1 MPNFSNQIRASSSLIKRLKQRMTNPAALMQATRSFTTLEGHRPTIVHKRSLDILHDPWFNKGTAFSMTERDRLDIRGLLPPNVMSSEQQIQRFMVDLKRL EVQARDGPSDPNALAKWRILNRLHDRNETMYFKVLIANIEEYAPIVYTPTVGLACQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSR ILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTNNEKLLKDPLYLGLQEHRLDGDEYIAVIDEFMEAVFTRWPHVIVQFEDFQSKWAFKLL QRYRNAYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMIDFPKQKIVVAGAGSAGIGVLNAARKTMARMLGNNESAFESAGRQFWVVDAKGLITEERENIDL EALPFARKVEEASRQGLREGASLAEVVREVKPDVLLGLSAVGGLFSKEVLEALKGSTSTRPAIFAMSNPTKNAECTPEEAFSIVGDNIIFASGSPFKDVD LGNGHIGHCNQGNNMYLFPGIGLGTLLSGSRIISDGMLQAAAECLAAYMTEEEVLKGIIYPSTSRIRDITKEVAAAVVKEAIEEDLAEGYREMDARELRK LSQEEIEEYVKNNMWSPDYPTLVYKKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.002G135300 [exp]	0	1
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.001G019400 [exp]	2.23	0.9335
AT1G23170			Protein of unknown function DU...		Potri.008G131800 [exp]	2.44	0.9289
AT5G61970			signal recognition particle-re...		Potri.015G105600 [exp]	3.60	0.9018
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.016G077000 [exp]	7.61	0.9318	UBQ1.1
AT1G26850			S-adenosyl-L-methionine-depend...		Potri.010G094100 [exp]	10.81	0.9084
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.002G036600 [exp]	14.00	0.9101
AT1G29630			5'-3' exonuclease family prote...		Potri.011G077001 [exp]	15.55	0.9058
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.013G082200 [exp]	18.65	0.8681	CESA3.1
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.008G097600 [exp]	20.92	0.9105	Pt-RGP3.4
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.019G099000 [exp]	22.02	0.9162

Compare expression of checked genes

Potri.002G135300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.