Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RAB6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44610 385 / 3e-138 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT5G10260 363 / 7e-130 AtRABH1e RAB GTPase homolog H1E (.1) AT2G22290 344 / 4e-122 ATRAB6, ATRAB-H1D, AtRABH1d ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, RAB GTPase homolog H1D (.1) AT4G39890 317 / 2e-111 AtRABH1c RAB GTPase homolog H1C (.1) AT5G64990 300 / 8e-105 AtRABH1a RAB GTPase homolog H1A (.1.2) AT5G45130 160 / 1e-49 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT4G19640 157 / 1e-48 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT3G54840 157 / 2e-48 ARA6, AtRABF1, Ara-6, AtRab5C Ras-related small GTP-binding family protein (.1.2) AT4G17160 144 / 2e-43 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1) AT3G11730 141 / 4e-42 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086700 [exp] 386 / 9e-139 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.005G075300 [exp] 363 / 1e-129 AT5G10260 400 / 2e-144 RAB GTPase homolog H1E (.1) Potri.001G147900 [exp] 289 / 4e-100 AT2G44610 298 / 2e-103 Ras-related small GTP-binding family protein (.1) Potri.010G226300 [exp] 155 / 6e-48 AT3G54840 373 / 7e-134 Ras-related small GTP-binding family protein (.1.2) Potri.012G117800 [exp] 155 / 1e-47 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.008G035800 [exp] 154 / 2e-47 AT3G54840 367 / 3e-131 Ras-related small GTP-binding family protein (.1.2) Potri.018G079300 [exp] 150 / 6e-46 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.015G113000 [exp] 149 / 3e-45 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.003G054900 [exp] 143 / 5e-43 AT4G19640 270 / 4e-93 ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019501 [exp] 386 / 2e-138 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10043349 [exp] 386 / 2e-138 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10041702 [exp] 367 / 3e-131 AT5G10260 404 / 7e-146 RAB GTPase homolog H1E (.1) Lus10024046 [exp] 369 / 1e-130 AT5G10260 405 / 3e-145 RAB GTPase homolog H1E (.1) Lus10014336 [exp] 366 / 1e-130 AT5G10260 402 / 3e-145 RAB GTPase homolog H1E (.1) Lus10019502 [exp] 199 / 4e-66 AT2G44610 218 / 5e-74 Ras-related small GTP-binding family protein (.1) Lus10028820 [exp] 160 / 1e-49 AT3G54840 354 / 3e-126 Ras-related small GTP-binding family protein (.1.2) Lus10017462 [exp] 161 / 5e-48 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10038334 [exp] 152 / 3e-46 AT5G45130 349 / 3e-124 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10034903 [exp] 152 / 4e-46 AT5G45130 258 / 2e-88 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.002G135500.1 pacid=42777051 polypeptide=Potri.002G135500.1.p locus=Potri.002G135500 ID=Potri.002G135500.1.v4.1 annot-version=v4.1 ATGGCACCGGTATCGGCGTTGGCCAAGTACAAGTTGGTGTTCTTGGGGGATCAGTCTGTGGGAAAAACCAGTATTATCACTCGCTTCATGTACGACAAAT TCGACAATACCTATCAGGCTACCATTGGTATTGATTTTTTATCAAAGACGATGTACCTTGAAGATCGAACTGTTAGGCTGCAACTCTGGGACACTGCAGG ACAGGAAAGGTTCAGGAGTCTCATCCCAAGTTATATTAGGGATTCCTCTGTGGCAGTCATTGTTTTTGATGTTGCAAGCAGGCAATCTTTCTTGAATACT TCAAAGTGGATTGAAGAAGTTCGCTCTGAGCGGGGGAGCGATGTTATCATTGTACTTGTTGGGAATAAAACAGATCTTGTGGACAAAAGGCAGGTATCAA TAGAGGAAGGAGAAGCTAAAGCCCGTGACCTCAACGTCATGTTTATTGAAACTAGCGCAAAGGCTGGCTTCAATATAAAGGCACTGTTCCGGAAGATTGC AGCAGCCTTACCAGGAATGGAAACACTCTCTTCAAGTAAGCAAGAAGATATGGTTGATGTCAACCTGAAGTCTTCCAATGCAAATGCATCACAGTCCCAA CAACAATCAGGAGGATGCGCCTGCTAA
AA sequence Show only first row Show all	>Potri.002G135500.1 pacid=42777051 polypeptide=Potri.002G135500.1.p locus=Potri.002G135500 ID=Potri.002G135500.1.v4.1 annot-version=v4.1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNT SKWIEEVRSERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSSKQEDMVDVNLKSSNANASQSQ QQSGGCAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Potri.002G135500 [exp]	0	1	Pt-RAB6.1
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Potri.014G141700 [exp]	6.32	0.8833	Pt-ARPC1.1
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Potri.010G062000 [exp]	6.63	0.8784
AT5G01970			unknown protein		Potri.016G141300 [exp]	7.21	0.8829
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.005G226400 [exp]	19.59	0.8788	NAP4.2
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	19.89	0.8599
AT2G28310			Protein of unknown function (D...		Potri.009G011000 [exp]	21.56	0.8751
AT1G35780			unknown protein		Potri.005G165500 [exp]	23.45	0.8670
AT4G25600			Oxoglutarate/iron-dependent ox...		Potri.012G142800 [exp]	24.24	0.8589
AT4G35100		SIMIP, PIP3A, P...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.004G176300 [exp]	25.59	0.7963	PIP2.1
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.019G036700 [exp]	25.92	0.8724	SYP131.2

Compare expression of checked genes

Potri.002G135500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.