Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60410 109 / 8e-28 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) AT4G17440 58 / 8e-10 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G18295 55 / 7e-09 Protein of unknown function (DUF1639) (.1) AT1G25370 53 / 7e-08 Protein of unknown function (DUF1639) (.1) AT4G20300 45 / 3e-05 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G48770 44 / 4e-05 Protein of unknown function (DUF1639) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G044800 [exp] 235 / 2e-76 AT3G60410 105 / 6e-26 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.010G122700 [exp] 64 / 1e-11 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1) Potri.012G055200 [exp] 63 / 1e-11 AT3G18295 109 / 3e-29 Protein of unknown function (DUF1639) (.1) Potri.008G122600 [exp] 62 / 6e-11 AT1G25370 100 / 6e-25 Protein of unknown function (DUF1639) (.1) Potri.003G157500 [exp] 48 / 4e-06 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.001G073400 [exp] 47 / 5e-06 AT4G20300 226 / 3e-71 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.006G233100 [exp] 45 / 4e-05 AT1G55340 130 / 9e-37 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.014G044700 [exp] 43 / 6e-05 ND / Potri.014G044600 [exp] 42 / 6e-05 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010984 [exp] 62 / 9e-11 AT3G60410 89 / 3e-20 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10038942 [exp] 55 / 6e-10 AT1G25370 72 / 7e-17 Protein of unknown function (DUF1639) (.1) Lus10004378 [exp] 57 / 5e-09 AT4G17440 96 / 4e-23 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10027232 [exp] 52 / 2e-08 AT1G68340 75 / 3e-17 Protein of unknown function (DUF1639) (.1) Lus10035144 [exp] 47 / 8e-06 AT1G25370 87 / 2e-20 Protein of unknown function (DUF1639) (.1) Lus10036240 [exp] 43 / 0.0002 AT4G20300 217 / 3e-67 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10038379 [exp] 42 / 0.0002 AT4G20300 188 / 1e-58 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [poplar] [flax] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Potri.002G136200.1 pacid=42779068 polypeptide=Potri.002G136200.1.p locus=Potri.002G136200 ID=Potri.002G136200.1.v4.1 annot-version=v4.1 ATGGTGTTTCGCTCCATATCTGCAACCCACCCAAACACAACCAATATTGTTATGGCTTCTTCTACTACTGTCAAACCACACCAGCCACTCCATAACTTTC CTCTACAAGACCTTAAATGGTCAATGAACCCTTCCAACAACGCCACCAACCACCACCGCTTTCGCTCCAACAAATCTCCTCACCGGGATGCTGCTGCTGC TGACTCGGACGGAGACGGCGGGGTAAAGGTTGAGAAGTTATCGAAGCAAAAATCTGATGATGCTGAGACTTTGGAGAAGAAATCGAAGATCTTTATTCGT TTGAGGACCAACAAAAATAGCAGCGGTAGCAGTAGCAGCAAGTGCATGGTTGATGATGTGGCTGCGGATGCAGGGGATCTGGACTCTGCTGCTGTAGTAG AGGATGTGGAGGAGTCGATACCGAAGACGTGGAATCTGAGGCCGAGGAGAGCCGTTAATAAGGGTTTGAATGGGAGCGGAGGTGCTGTGAAGATTGGTGG AGGCGCGGTGCAAGAGATCAAATCTCAGGTGACAAGTAGTAATCGGAGTGAATGGACTCGGTCGAACCGGAATGGTAATGATGCTACTAACTATGACAAC AACAACAACAACAACAACAAGGAGAAAGAGAAGGAAAAGGAAAAGGAGAAGAAGTTGAGGTTTTCGATTCCTCTTACTAGAGAGGAAATTGAAGAAGATA TTTATTCCTTGACTGGGTCAAAGCCCGCGAGAAGGTCAAAGAAGAGAGCTAAGCATGTGCAAAAACAACTTGATTGCTTGTTTCCTGGTATGTGGCTGGC TTCGATAACGCCGGAATGTTACAAGGTTCATGAAGCTCCTTCAAAGTTGAGAATGTAG
AA sequence Show only first row Show all	>Potri.002G136200.1 pacid=42779068 polypeptide=Potri.002G136200.1.p locus=Potri.002G136200 ID=Potri.002G136200.1.v4.1 annot-version=v4.1 MVFRSISATHPNTTNIVMASSTTVKPHQPLHNFPLQDLKWSMNPSNNATNHHRFRSNKSPHRDAAAADSDGDGGVKVEKLSKQKSDDAETLEKKSKIFIR LRTNKNSSGSSSSKCMVDDVAADAGDLDSAAVVEDVEESIPKTWNLRPRRAVNKGLNGSGGAVKIGGGAVQEIKSQVTSSNRSEWTRSNRNGNDATNYDN NNNNNNKEKEKEKEKEKKLRFSIPLTREEIEEDIYSLTGSKPARRSKKRAKHVQKQLDCLFPGMWLASITPECYKVHEAPSKLRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60410			Protein of unknown function (D...		Potri.002G136200 [exp]	0	1
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.006G259400 [exp]	4.00	0.8919
AT3G57990			unknown protein		Potri.003G088500 [exp]	5.38	0.9073
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.008G011300 [exp]	5.91	0.8772	CMEIL2.2,EIN3D
AT1G11050			Protein kinase superfamily pro...		Potri.017G132250 [exp]	6.08	0.8389
AT2G24360			Protein kinase superfamily pro...		Potri.006G279900 [exp]	8.06	0.8806
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.013G018400 [exp]	8.83	0.8834
AT3G57990			unknown protein		Potri.016G046900 [exp]	14.49	0.8775
AT3G18150			RNI-like superfamily protein (...		Potri.001G322900 [exp]	21.16	0.8117
AT3G07565			Protein of unknown function (D...		Potri.014G197300 [exp]	21.72	0.8809
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Potri.013G079800 [exp]	33.67	0.8546

Compare expression of checked genes

Potri.002G136200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.