Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATHB.8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60390 286 / 4e-96 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT2G44910 275 / 8e-92 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT4G16780 254 / 4e-84 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT5G47370 251 / 8e-83 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT4G17460 242 / 3e-79 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT5G06710 201 / 8e-63 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT4G37790 198 / 4e-62 HD HAT22 Homeobox-leucine zipper protein family (.1) AT2G22800 180 / 3e-55 HD HAT9 Homeobox-leucine zipper protein family (.1) AT2G01430 149 / 3e-43 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 129 / 2e-36 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G045100 [exp] 462 / 4e-166 AT3G60390 263 / 5e-87 homeobox-leucine zipper protein 3 (.1) Potri.003G079800 [exp] 296 / 2e-100 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.001G155100 [exp] 289 / 1e-97 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.006G193700 [exp] 211 / 1e-66 AT5G06710 251 / 1e-81 homeobox from Arabidopsis thaliana (.1.2) Potri.016G059000 [exp] 211 / 2e-66 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.009G023600 [exp] 210 / 1e-65 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.001G229700 [exp] 209 / 4e-65 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.016G058600 [exp] 202 / 8e-65 AT5G06710 239 / 9e-79 homeobox from Arabidopsis thaliana (.1.2) Potri.007G008200 [exp] 199 / 9e-63 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004759 [exp] 279 / 3e-93 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10007849 [exp] 271 / 2e-90 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10040175 [exp] 259 / 1e-85 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 231 / 3e-74 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10021064 [exp] 200 / 3e-63 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10016254 [exp] 198 / 4e-61 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10004161 [exp] 197 / 6e-61 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 197 / 8e-61 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10019256 [exp] 147 / 5e-43 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10011569 [exp] 144 / 1e-41 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper CL0123 [poplar] [flax] PF04618 [poplar] [flax] HD-ZIP_N HD-ZIP protein N terminus
Representative CDS sequence Show only first row Show all	>Potri.002G136400.2 pacid=42779625 polypeptide=Potri.002G136400.2.p locus=Potri.002G136400 ID=Potri.002G136400.2.v4.1 annot-version=v4.1 ATGGGTGATAAAAATGATGGCTTGGGCTTGAGTTTGAGCTTGGGATATGCTACACAACGGAATCATCATCAGCAGCCTTCTTTGAAGCTAAATCTCATGC CTTTGGCTTCACAAAACAAACATAAGAAAACTTCCTGGACTGACCTCTTTCAATCACCAGATAGAACATGTGATACGAGGTTGTTTCAACGAGGGATTGA CATGAACAGGGTACCGGCTGCTGTGGCAGATTGTGATGACGAAACTGGGGTTTCTTCACCGAACAGTACACTATCCAGCTTGATCAGTGGTAAAAGAAGC GAAAGAGAACAGATTGGTGAAGAAACAGAAGCAGAGAGAGCCTCTTGCTCTCGCGGAAGTGATGATGAAGATGGTGGTGATGCTTCTAGGAAGAAGCTGA GACTGTCAAAGGAACAGTCGTCAGTGCTTGAAGAGAATTTCAAGGAACATAATACTCTCAATCCCAAGGAAAAGCTGGCTTTGGCAAAACAGTTGAATCT CAGGCCAAGGCAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACTAAGTTGAAGCAAACTGAAGTAGATTGCGAGTACCTAAAGACGTGCTGTGAA AATCTAACAGAGGAGAACAGGAGGTTACTGAAGGAGGTGCAAGAGCTCAGAGCACTGAAACTCTCCCCACAGCTCTACATGCACATGAACCCTCCCACCA CCCTCACCATGTGTCCTTCATGCAAGCGTGTTGTCTCATCGGCATCATCATCTTCTGCTGCTGTCGTGTCCTCTGCTCTTGCTCCAATTGCCTCGACCCC CCAACCACAACGACCGGTGCCCATTAACCCTTGGGCAGCAATGCCTATCCACCATCGAACTTTTGATGCTCCCGCTTCTAGTTCATGA
AA sequence Show only first row Show all	>Potri.002G136400.2 pacid=42779625 polypeptide=Potri.002G136400.2.p locus=Potri.002G136400 ID=Potri.002G136400.2.v4.1 annot-version=v4.1 MGDKNDGLGLSLSLGYATQRNHHQQPSLKLNLMPLASQNKHKKTSWTDLFQSPDRTCDTRLFQRGIDMNRVPAAVADCDDETGVSSPNSTLSSLISGKRS EREQIGEETEAERASCSRGSDDEDGGDASRKKLRLSKEQSSVLEENFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKTCCE NLTEENRRLLKEVQELRALKLSPQLYMHMNPPTTLTMCPSCKRVVSSASSSSAAVVSSALAPIASTPQPQRPVPINPWAAMPIHHRTFDAPASSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60390	HD	HAT3	homeobox-leucine zipper protei...		Potri.002G136400 [exp]	0	1	Pt-ATHB.8
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.007G115200 [exp]	3.46	0.9304	MADS1.5
AT1G14930			Polyketide cyclase/dehydrase a...		Potri.008G131200 [exp]	3.74	0.9242	MLP.3
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.006G267201 [exp]	3.87	0.9212
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.001G101500 [exp]	4.24	0.9078
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G028000 [exp]	6.00	0.9138
AT2G16385			unknown protein		Potri.009G119900 [exp]	6.63	0.9197
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Potri.004G047500 [exp]	7.00	0.9124
					Potri.017G147700 [exp]	8.36	0.8813
AT5G02580			Plant protein 1589 of unknown ...		Potri.006G213500 [exp]	10.00	0.8972
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G026500 [exp]	11.48	0.9068

Compare expression of checked genes

Potri.002G136400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.