Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60380 86 / 4e-17 unknown protein AT4G16790 52 / 1e-06 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G045300 [exp] 911 / 0 AT3G60380 89 / 3e-18 unknown protein Potri.003G079900 [exp] 65 / 1e-10 AT4G16790 114 / 8e-27 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G155000 [exp] 60 / 4e-09 AT4G16790 114 / 5e-27 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028193 [exp] 255 / 7e-75 AT3G60380 112 / 2e-25 unknown protein Lus10042896 [exp] 181 / 2e-48 AT3G60380 91 / 1e-18 unknown protein Lus10004758 [exp] 47 / 5e-05 AT4G16790 72 / 5e-13 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Potri.002G136600.1 pacid=42778203 polypeptide=Potri.002G136600.1.p locus=Potri.002G136600 ID=Potri.002G136600.1.v4.1 annot-version=v4.1 ATGGCAGATCCTGTCTCACATTCCAAGCCCCCTTCGCCACTCAAGGGGCTTGACAACTCAAAACCCATCACCAGAACCAATAAGTCATCATCTTTCACTA GTCACATACTCTGTAAGTCTCTCTTTTTTGTGCTCTTTCTTTTTCTTATTCCACTATTTCCTTCACAAGCTCCTGACTTTATCAGCCTGTCTACTATTCT CACCAAATTTTGGGGCCTTGCACACCTTCTTTTCATAGGCCTTGCTGTTTGTTATGTCTTGTTTAGGTGTAGAAATGTTGAAGATTTTGACTCCGAACCA CCTCCCCAGTATTCTGATGATTCACAATCATCTTATGTGTCTAGGATTTTTCACGTTTCTCCAATTTCTTATGATGGGTCTGAAAATTTGTCTGGGTTTC ATGACAAACATGTGTACCAAAATTGGAATTCACAGTATTATAGTGGTGAGTCTATGGTTAATGGCACTAATGGCCATGAACTGAACAAAACTGAATCGCA GTACTGTAGGGATGATGAGTCTATGGTTGATGATACTAACGGTAATGAACAAAACAAGGGTGGATCTTTAAATGCTGAAAATGACTTTGAAAATTCATTT GAGAATGGTGATAGCGATGTGATTCAAGCTCGGAATTCTCAGTATTTTCAGAGTGAATCGATGGTTGTAGGGTCTCAACCGAACTATTCACTTGATGAAT ATGGTAATCTAGGACAAGTAAATGGTTACAGGCCACTAGGGTTGCCAATTAGGAGTTTAAATTCGAGGATTAGGGTTCTGGATAGCTCTCTATTTAGTAA TGAAAACGAGTCCGGTACAAGCTTCTCGGCCTCAGGCTCCACTGATGGTTCTGGAAGGAGTGCAAACGAGAATGATTTTGGTGATATGCCTCCTACGAAC TTGGAGGAGAGTTTTAATGAAACTGTAGCCTTACCTTCCGAAATCCCATGGCATCCGAGATCTGAGAGGAAGGAAATTAGAGAGAAAGTAGGTTCTTTTG CTGGAGATTCTTCGCATCTTAGGCCTCTCTCAGTCGATGAAACACAGTTCGAGTCTCTCAAATCACAGTTAGAGTCTCTCAAAACAAAGTCTTTCAGGTC CACAACATCTTTGTCAGTTCAAAGGGGTCCAGGTCCACAACATCTTGGTCCTTCACATTTTAGACCTCTCTCAGTTGATGAAACTCAAATCGAGTCACAA TCTTTCAGGTCCACGACATCTTTTGCATCCCAAGGGAGCTCAGCCTCGTATTCACCAACCACTCTCTCACCCTCACATTCTATTTCTTCTGAATTGCCAA ATTCTGAAACCGAAGAATTAGGGAAAAACAAGAGTTATCGTGCATCTTATCCTCCTTCTTCTCAATCACTAGCAACCAGGAAGGCGGATGCTCCACTGAA TGCATTTCATTTGAGGAGATACAGTGGTGGGTCTTTGTTCCCAAAGGATTCACGGAGAAGCTTAAAGGATGAGTTGAAAGATTTGAGAGGGAAAAGGAAT GAGCATACAGTGGGTAGTGGGGAGACCGGGCAGGGTTCTTTGAGATCAGATCAGAAACCTGCAGTACCTGTTAAAACTTCATCACTAAAGGGACAATTTA TTAGGACTATTAAAGCTAGTGGATATGCTGCAGAGACAATAAAAGCTAAGGAGGCAGGTAGAAAACACATTGATGAGAAGGTTGGAAAAATTTGCGATGA AGCTCAAACAGTAAACGTGGGAAAGAATGAAATGAAAAGAGGACCTGATAGTATCTTACTTGGCTCTGATAAAAAGAACTCGGATACTCATCATCATATG CCAAAGCCAACCCTTTCAAAGTATATGAAGAAGGAAAAGGAAATATTTTCAGAAAGTCTTACCGTGGAGTCCACAAAAGACTCAGAAAGTGGGACTGATA ATTCTCGAGTGAGTTCAGATGAACATTCTGCGCCTGCCACTAACATTGATGCAGGAGATTACTCTAGCGAGGTTGATAAGAAAGCTGGTGAGTTCATAGC CAAGTTCAGGGAGCAGATTAGGCTTCAGAAAGTTGCATCTATTCAGAGATCAAAGGGAAAGCGCTTGAATGGTACTTATGTTAGGTGA
AA sequence Show only first row Show all	>Potri.002G136600.1 pacid=42778203 polypeptide=Potri.002G136600.1.p locus=Potri.002G136600 ID=Potri.002G136600.1.v4.1 annot-version=v4.1 MADPVSHSKPPSPLKGLDNSKPITRTNKSSSFTSHILCKSLFFVLFLFLIPLFPSQAPDFISLSTILTKFWGLAHLLFIGLAVCYVLFRCRNVEDFDSEP PPQYSDDSQSSYVSRIFHVSPISYDGSENLSGFHDKHVYQNWNSQYYSGESMVNGTNGHELNKTESQYCRDDESMVDDTNGNEQNKGGSLNAENDFENSF ENGDSDVIQARNSQYFQSESMVVGSQPNYSLDEYGNLGQVNGYRPLGLPIRSLNSRIRVLDSSLFSNENESGTSFSASGSTDGSGRSANENDFGDMPPTN LEESFNETVALPSEIPWHPRSERKEIREKVGSFAGDSSHLRPLSVDETQFESLKSQLESLKTKSFRSTTSLSVQRGPGPQHLGPSHFRPLSVDETQIESQ SFRSTTSFASQGSSASYSPTTLSPSHSISSELPNSETEELGKNKSYRASYPPSSQSLATRKADAPLNAFHLRRYSGGSLFPKDSRRSLKDELKDLRGKRN EHTVGSGETGQGSLRSDQKPAVPVKTSSLKGQFIRTIKASGYAAETIKAKEAGRKHIDEKVGKICDEAQTVNVGKNEMKRGPDSILLGSDKKNSDTHHHM PKPTLSKYMKKEKEIFSESLTVESTKDSESGTDNSRVSSDEHSAPATNIDAGDYSSEVDKKAGEFIAKFREQIRLQKVASIQRSKGKRLNGTYVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60380			unknown protein		Potri.002G136600 [exp]	0	1
AT2G17440		PIRL5	plant intracellular ras group-...		Potri.003G090100 [exp]	4.47	0.8529
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.014G014100 [exp]	4.58	0.8379
AT4G17900			PLATZ transcription factor fam...		Potri.003G092800 [exp]	5.74	0.8553
AT1G34750			Protein phosphatase 2C family ...		Potri.002G097200 [exp]	7.07	0.8350
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Potri.012G076400 [exp]	11.22	0.8245
AT1G13340			Regulator of Vps4 activity in ...		Potri.004G100900 [exp]	13.41	0.8297
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.003G052400 [exp]	15.00	0.8129	GL2.1
AT1G78310			VQ motif-containing protein (....		Potri.002G099900 [exp]	16.88	0.8092
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.015G138900 [exp]	18.43	0.8121
AT4G17900			PLATZ transcription factor fam...		Potri.001G141500 [exp]	18.73	0.8022

Compare expression of checked genes

Potri.002G136600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.