Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44900 1300 / 0 ARABIDILLO-1, ARABIDILLO1 F-box Armadillo protein 1, ARABIDILLO-1 (.1) AT3G60350 1261 / 0 ARABIDILLO-2, ARABIDILLO2 F-box Armadillo protein 2, ARABIDILLO-2 (.1) AT2G23140 70 / 7e-12 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT2G14635 60 / 4e-11 unknown protein AT3G46510 64 / 5e-10 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G77000 61 / 2e-09 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G21410 59 / 6e-09 SKP2A F-box/RNI-like superfamily protein (.1) AT5G62560 60 / 7e-09 PUB41 RING/U-box superfamily protein with ARM repeat domain (.1) AT5G65200 59 / 2e-08 ATPUB38 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) AT5G67340 58 / 2e-08 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046000 [exp] 1531 / 0 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.001G079300 [exp] 1102 / 0 AT2G44900 1056 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.007G051000 [exp] 74 / 4e-13 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 73 / 6e-13 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.009G165900 [exp] 68 / 3e-11 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.005G088800 [exp] 66 / 4e-11 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.009G029600 [exp] 61 / 2e-09 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.004G205000 [exp] 61 / 5e-09 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.001G238500 [exp] 59 / 1e-08 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042900 [exp] 1159 / 0 AT2G44900 1321 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10028197 [exp] 1087 / 0 AT2G44900 1144 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10028198 [exp] 195 / 1e-57 AT2G44900 243 / 4e-76 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10019308 [exp] 72 / 2e-12 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 72 / 2e-12 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 66 / 1e-10 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10040998 [exp] 64 / 2e-10 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10011516 [exp] 63 / 1e-09 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10013444 [exp] 62 / 1e-09 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10016565 [exp] 60 / 6e-09 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.002G137100.1 pacid=42778049 polypeptide=Potri.002G137100.1.p locus=Potri.002G137100 ID=Potri.002G137100.1.v4.1 annot-version=v4.1 ATGAATCGTAGGGTGCGGCAGAAAGTGGCGAAGAAGAGTAAGGAAAAGGTGGAATTACCTAGTAACCCTGAAATTGGAGATGCGGGTTTGTGTCCTGATA GTAACGAGGATGTTGATTGGACTAGCTTGCCAGATGATACTGTGATTCAGTTATTTTCCTGTTTGAATTATCGTGACCGCGCAAGCTTGTCATCGACGTG CAAGACATGGAGGGTTTTAGGTCTTTCTTCGTGCTTGTGGATTTCATTGGATCTTCGCGCCCACAAATGCGATCCTGGAATGGCGGTTTCACTTGCTTCT AGGTGTGTGAATCTTCAGAAGATTCGGTTTCGTGGAGCAGAGTCTGCTGATGCAATAATACATCTTCAAGCAAGGAATTTACGTGAAATAAGTGGTGATT ACTGTAGGAAAATAACAGATGCAACTCTTTCTATGATTGTTGCTCGGCATGAGGCCCTTGAAACCCTCCAACTTGGACCAGACTTCTGTGAGAAGGTAAG TAGTGATGCTATTAAAGCAATAGCCTTTTGCTGTCCCAAACTAAAGAAACTTCGGCTCTCTGGATTAAGGGATGTCTCTGCTGATGTCATCAATGCTTTA GCTAAGCATTGTCCAAATCTGATTGATATTGGGTTCTTGGACTGTCTAAAGGTTGATGAGGCAGCATTGGGGAATGTAGTATCTGTTCATTTCCTCTCAG TTGCTGGGACATCAAATATGAAGTGGGGCGTGGTCTCACATCTTTGGCATAAGCTGCCTAAATTGATCGGGTTGGATGTTTCAAGAACTGATATTGATCC AAGTGCAGTTTCTAGACTATTATCATTATCACCTAGCTTGAAGGTTTTGTGTGCAATGAATTGCCCAGTTCTTGAAGAAGACAATGCCTTTAGTGTGAAT AAATACAAAGGAAAATTGTTACTTGCCCTTTTCAATGACATTTTTAAAGGACTAGCTTCTTTATTTGCCGATATTACAAAGATGGGGAAAAATGTTCTTT TGGAGTGGAGGAATTTAAAGACCAAGGACAAGAACGTCGATGAAATCATGAGTTGGCTTGAATGGATTCTATCCCATACCCTTTTGCGCACTGCTGAGAG CAATCCACAAGGTTTGGATGTTTTCTGGCTCAAGCTAGGCGCACCAATATTACTCAGTTTAATGCAGAGCTCACAGGAAGAAGTTCAAGAAAGGGCGGCC ACAGGACTTGCAACGTTTGTGGTCATTGATGATGAAAATGCTAGCATAGATTGTGGAAGGGCCGAGGCAGTTATGCGAGATGGTGGCATACGTCTTCTTC TAAACCTTGCAAAATCTTGGAGGGAAGGTCTTCAGTCAGAGGCTGCTAAGGCAATAGCAAACTTGTCCGTGAATGCAAATGTAGCAAAAGCTGTTGCAGA AGAAGGAGGAATTGAAATCCTTGCCGGGCTGGCAAGGTCCATGAACAGGCTGGTTGCCGAAGAGGCTGCTGGAGGGCTTTGGAATCTTTCAGTCGGAGAA GAGCACAAGGGTGCCATTGCTGAGGCTGGTGGCGTCAAAGCTCTGGTTGACCTTATATTCAAATGGTCCTCTGGTAGTGATGGAGTTCTGGAACGTGCAG CCGGTGCTTTGGCAAATTTGGCAGCTGATGACAAGTGTAGCATGGAGGTTGCACTGGCAGGTGGTGTGCATGCTTTGGTGATGCTTGCTCGAAATTGCAA GTTTGAGGGAGTACAAGAGCAGGCTGCTCGTGCGTTAGCTAACTTGGCTGCTCATGGAGATAGCAATTCTAACAATGCTGCTGTTGGACAAGAAGCAGGT GCTCTTGAAGCCCTTGTTCAACTCACACGTTCGCTCCATGAAGGTGTCAGGCAGGAAGCTGCTGGTGCATTATGGAACTTATCATTCGATGACAGAAACC GAGAAGCAATTGCAGCAGCTGGTGGTGTTGAGGCCTTGGTCGCCCTTGCACAATCTTGTGCAAATGCCTCTCCAGGTCTTCAAGAGAGGGCTGCTGGAGC TCTCTGGGGATTGTCAGTGTCAGAAGCCAACAGCATTGCTATTGGACAAGAAGGAGGTGTGGCGCCTCTGATTGCTCTGGCACGCTCTGAGGCTGAGGAT GTTCATGAAACTGCTGCAGGAGCTCTCTGGAATCTTGCTTTTAATCGAGGTAATGCTCTTCGTATAGTGGAGGAAGGGGGGGTTCCTGCGCTTGTTGATC TATGTTCTTCATCAGTATCAAAAATGGCTCGCTTCATGGCTGCATTAGCATTGGCCTATATGTTTGATGGGAGAATGGATGAATTTGCATTAATAGGAAC TTCAACAGAAAGCATTTCAAAGAGCGTGAATTTAGATGGAGCTAGAAGGATGGCTTTGAAGCACATTGAGGCCTTTGTCCTTACATTTACTGATCCGCAA GCATTTGCCACTGCTGCTGCATCATCAGCTCCAGCAGCATTAGCACAAGTAACTGAGAGAGCTCGTATTCAAGAAGCAGGACATCTGCGATGCAGTGTAG CTGAAATTGGAAGATTTGTTGCCATGCTACGGAATCCTTCTTCTATACTAAAGGCATGTGCTGCATTCGCTCTTCTCCAGTTTACCATTCCTGGTGGACG GCATGCTTTGCACCATGCGAGTCTCATGCAGAGTGCTGGAGCTGCACGGGTCCTGCGAGCTGCAGCTGCTGCAGCAACTGCACCACTTGAAGCCAAAATC TTTGCAAGAATTGTGCTGCGCAATCTTGAGTTCCACCATATAGAATCTTCAATATGA
AA sequence Show only first row Show all	>Potri.002G137100.1 pacid=42778049 polypeptide=Potri.002G137100.1.p locus=Potri.002G137100 ID=Potri.002G137100.1.v4.1 annot-version=v4.1 MNRRVRQKVAKKSKEKVELPSNPEIGDAGLCPDSNEDVDWTSLPDDTVIQLFSCLNYRDRASLSSTCKTWRVLGLSSCLWISLDLRAHKCDPGMAVSLAS RCVNLQKIRFRGAESADAIIHLQARNLREISGDYCRKITDATLSMIVARHEALETLQLGPDFCEKVSSDAIKAIAFCCPKLKKLRLSGLRDVSADVINAL AKHCPNLIDIGFLDCLKVDEAALGNVVSVHFLSVAGTSNMKWGVVSHLWHKLPKLIGLDVSRTDIDPSAVSRLLSLSPSLKVLCAMNCPVLEEDNAFSVN KYKGKLLLALFNDIFKGLASLFADITKMGKNVLLEWRNLKTKDKNVDEIMSWLEWILSHTLLRTAESNPQGLDVFWLKLGAPILLSLMQSSQEEVQERAA TGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLNLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNRLVAEEAAGGLWNLSVGE EHKGAIAEAGGVKALVDLIFKWSSGSDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAG ALEALVQLTRSLHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALAQSCANASPGLQERAAGALWGLSVSEANSIAIGQEGGVAPLIALARSEAED VHETAAGALWNLAFNRGNALRIVEEGGVPALVDLCSSSVSKMARFMAALALAYMFDGRMDEFALIGTSTESISKSVNLDGARRMALKHIEAFVLTFTDPQ AFATAAASSAPAALAQVTERARIQEAGHLRCSVAEIGRFVAMLRNPSSILKACAAFALLQFTIPGGRHALHHASLMQSAGAARVLRAAAAAATAPLEAKI FARIVLRNLEFHHIESSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Potri.002G137100 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.014G036800 [exp]	1.00	0.8852
AT4G36980			unknown protein		Potri.005G138200 [exp]	4.89	0.8781
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Potri.016G043900 [exp]	7.14	0.8059
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099402 [exp]	9.00	0.8674
AT2G21630			Sec23/Sec24 protein transport ...		Potri.002G238500 [exp]	9.32	0.8174
AT1G26090			P-loop containing nucleoside t...		Potri.010G130700 [exp]	9.32	0.7891
AT1G19485			Transducin/WD40 repeat-like su...		Potri.006G036601 [exp]	9.48	0.8416
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.004G176000 [exp]	10.34	0.7812
AT5G25270			Ubiquitin-like superfamily pro...		Potri.018G115500 [exp]	13.71	0.8067
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	17.43	0.8465

Compare expression of checked genes

Potri.002G137100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.