Plant FIBer expression Database

Potri.002G137200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60340 462 / 2e-164 alpha/beta-Hydrolases superfamily protein (.1.2)
AT5G47330 377 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1)
AT4G17480 353 / 4e-122 alpha/beta-Hydrolases superfamily protein (.1)
AT4G17483 352 / 7e-122 alpha/beta-Hydrolases superfamily protein (.1)
AT5G47340 351 / 5e-121 alpha/beta-Hydrolases superfamily protein (.1)
AT4G17470 345 / 1e-118 alpha/beta-Hydrolases superfamily protein (.1.2.3)
AT5G47350 313 / 5e-106 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G154600
[exp]
447 / 2e-158 AT3G60340 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2)
Potri.003G080100
[exp]
441 / 3e-155 AT3G60340 434 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042902
[exp]
445 / 2e-157 AT3G60340 442 / 2e-156 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10028200
[exp]
442 / 6e-156 AT3G60340 439 / 3e-155 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10004375
[exp]
402 / 5e-141 AT3G60340 411 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10040173
[exp]
396 / 8e-139 AT3G60340 409 / 4e-144 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10004757
[exp]
294 / 1e-94 AT5G47330 337 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF02089 Palm_thioest Palmitoyl protein thioesterase
Representative CDS sequence
>Potri.002G137200.1 pacid=42779689 polypeptide=Potri.002G137200.1.p locus=Potri.002G137200 ID=Potri.002G137200.1.v4.1 annot-version=v4.1
ATGGGTTTTTCCCTATTCGTTAAGGCAACAGCCTTTATGATCATTACATTGATGTTTACTTCTGTCCCTTTTACACACTCTGTTCCCTTCGTAGTTTTTC
ATGGTATTAGTGACAAATGCAGTAATAAGGGAGTCAAACAGTTCACTGAGCATTTAAGCAAGTGGTCAGGCATTCAAGGACATTGCATAGAAATTGGAGA
TGGAGCATGGGATTCTTGGACTATGCCCCTTCAAGATCAGACGGAAATTGCTTGTGAGAAGGTGAAGAGTATGAGTGAACTGAGCGATGGTTACAACTTA
ATTGGACTTTCTCAGGGTAGCTTGATTGCTCGAGGGGTTATCGAATTTTGTGAGGGGGGGCCTCCTGTGAAGAATTTGATTACGCTGGCAGGTATCCATG
CTGGTATCGCTTCAATTCCTTTCTGTGGAAGCACCATTATATGCGCTCTTTTGGATGATTTGATCAAGTCAGAGATCTACAGCAGTTATGTTCAGGAACA
CTTGGCTCCCAGCGGTTATATCAAAATCCCAACAGACATTCCGGCCTATATAAAAGGATGTAGATTCCTCCCCAAACTTAACAATGAGATCAAGAATACA
AGAAATTCAACATACAAGGAACGGTTCGCTAGCTTAGAGAACTTGGTTCTTATCATGTTTGAGCAAGATACAGTTTTGGTACCGAAGGAAACCTCCTGGT
TTGGATATTATCCAGATGGGTCCTTTGATACTGTTTTGCCTGCACAAGAGACTCTGCTCTACACTGAAGACTGGATCGGTTTGAAAACATTGGATGAAGC
TGGAAAAGTTAAATTCATTAACGTGTCTGGGGGGCATCTTGATATCTCGCAAACTGACATGAAGAAATACATATTGCCTTACTTGGAGGAACAAGCACCA
TCCCCGGGTCTGCTGATTGTAAAAGGATCTTCATCTGATAGATGGTTTTCAACAATCAAGAACAACTTCATGGAGCTGGTTGGACGCGCTGACGATCAAC
ATTTACTTGATATTCGGCAGTAG
AA sequence
>Potri.002G137200.1 pacid=42779689 polypeptide=Potri.002G137200.1.p locus=Potri.002G137200 ID=Potri.002G137200.1.v4.1 annot-version=v4.1
MGFSLFVKATAFMIITLMFTSVPFTHSVPFVVFHGISDKCSNKGVKQFTEHLSKWSGIQGHCIEIGDGAWDSWTMPLQDQTEIACEKVKSMSELSDGYNL
IGLSQGSLIARGVIEFCEGGPPVKNLITLAGIHAGIASIPFCGSTIICALLDDLIKSEIYSSYVQEHLAPSGYIKIPTDIPAYIKGCRFLPKLNNEIKNT
RNSTYKERFASLENLVLIMFEQDTVLVPKETSWFGYYPDGSFDTVLPAQETLLYTEDWIGLKTLDEAGKVKFINVSGGHLDISQTDMKKYILPYLEEQAP
SPGLLIVKGSSSDRWFSTIKNNFMELVGRADDQHLLDIRQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G60340 alpha/beta-Hydrolases superfam... Potri.002G137200
[exp]
0 1
AT5G01450 RING/U-box superfamily protein... Potri.014G020900
[exp]
1.00 0.9437
AT1G17260 AHA10 autoinhibited H\(+\)-ATPase is... Potri.001G161400
[exp]
2.44 0.9138 AHA10.1
AT1G09850 XBCP3 xylem bark cysteine peptidase ... Potri.004G057700
[exp]
2.44 0.9150
Potri.004G212550
[exp]
5.65 0.9135
Potri.005G045300
[exp]
6.00 0.8691
AT1G07380 Neutral/alkaline non-lysosomal... Potri.009G040600
[exp]
7.34 0.8181
AT5G21482 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ... Potri.006G221000
[exp]
7.68 0.8165
AT2G17710 unknown protein Potri.005G107800
[exp]
7.74 0.8941
AT2G22960 alpha/beta-Hydrolases superfam... Potri.001G291450
[exp]
8.00 0.8753
AT3G22104 Phototropic-responsive NPH3 fa... Potri.007G118800
[exp]
8.00 0.8597

Potri.002G137200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.