Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44830 901 / 0 Protein kinase superfamily protein (.1) AT5G47750 625 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 594 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 571 / 0 D6PK D6 protein kinase (.1) AT5G40030 527 / 0 Protein kinase superfamily protein (.1) AT3G27580 528 / 1e-180 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT1G79250 509 / 6e-174 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 505 / 9e-172 AGC1.5 AGC kinase 1.5 (.1.2.3) AT3G52890 498 / 2e-164 KIPK KCBP-interacting protein kinase (.1.2) AT1G16440 478 / 1e-162 RSH3 root hair specific 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G047500 [exp] 1263 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.016G004900 [exp] 637 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 632 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 591 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.017G075400 [exp] 538 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 522 / 3e-178 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.008G080600 [exp] 521 / 5e-178 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G114900 [exp] 523 / 8e-174 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.009G146700 [exp] 509 / 1e-169 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042911 [exp] 761 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10028208 [exp] 741 / 0 AT2G44830 639 / 0.0 Protein kinase superfamily protein (.1) Lus10038753 [exp] 602 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 601 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 598 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 568 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10022534 [exp] 537 / 0 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10032185 [exp] 519 / 1e-177 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 517 / 4e-177 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10020571 [exp] 495 / 7e-166 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G137700.4 pacid=42778786 polypeptide=Potri.002G137700.4.p locus=Potri.002G137700 ID=Potri.002G137700.4.v4.1 annot-version=v4.1 ATGGAAAGGATTGCAGAATCGAAGGCTCTTCCTGCTAAATTGCCTGTTGCGAGTCAGGTATCGTCAAGGGCATATGTAGTGTCAGGGAGAGAAGTGAGCC AGGCACCAAAGCTGCAGACAGGTCTGGTAAGAGATGTTGCGGGTCGATTTAATGCACATCAATCTCAAATTACGGACTTTCCTGTGCCTGTTAGACCGTG GAAAGGAAAGGACTCTGCAGCTATAGAAGACGACTTAATGCTTGATGTTGTTGTGACTTCTAAGGGCAGTGGTGATTCCTTTGATGAAGGTGAACCGAGT TCTTTCTCTGGGGCTAGTCATCCACCTGAACCTATTGACACAGATCTAATAATGAAAACGGTGTATGTACCAATCAGTCAAAAGAAAGCTGAGCCTGGAT GCCTTGTGAAGAGCATGTCTGTGAAGGGGCCTTTTCTAGAAGATCTTTCAATCAGGGTTTCGCCCAAAAAACCAAGCCCAGTGATTCTTTCTCCAGCAGA AAGTTTGATTGAAGAACCTAATGACTTACTTGTATTGCCTTCTCCGTTTACTGTTCCTCGTAGATCACAAAATACAGAAAACTCTCTCCTTCCACCTGAT TCAGAAGAGAAGGAATGTGTGTGGGATGCCTCTTTGCCTCCAAGTGGTAATGTGAGTCCACATAGTAGCATTGACAGTACTGGTGTTGTCACAGCTATGA GCATTGTCAATAGCTGTGCCAGTACATATCGGAGTGATGTTATTACAAGTGATGGCATGCTTACTATAGATAGAAACTGTGAGAGTACAAAAGGGAGTGT TAGTGTTAGAGGGGATTCGCTTGAAAGTGCAAAGACTAGTGTTAGTAGAGCAAGTGACAGTAGTGGTCTTAGTGATGACAGTAATTGGAGCAATATTACT GGCAGTGCAAATAAGCCTCATAAAGGAAATGATCCCAGGTGGAATGCTATTCTTGCCATTCGAGCACGAGATGGAATTTTGGGAATGAGTCACTTTAGAT TATTCAAACGCCTTGGGTGTGGTGACATTGGCAGCGTATATCTCTCAGAGCTGAGTGGAACTAGGTGTTTTTTTGCAATGAAAGTAATGGACAAGGCATC CCTTGCAAGCAGGAAAAAGTTGACAAGAGCTCAGACAGAAAGGGAGATTTTGCAGTTGTTGGATCATCCATTTCTGCCTACTTTATATACTCATTTTGAG ACGGACAGATTCTCATGTTTGGTTATGGAATATTGTCCAGGGGGTGATCTTCACACTCTGAGGCAACGACAACCTGGAAAACATTTTTCCGAGCATGCTG CCAGATTTTATGCGGCAGAGGTTTTATTGGCACTTGAATATCTTCACATGCTTGGAGTAGTCTACAGAGACTTGAAACCTGAAAATGTCCTAGTCCGTGA TGATGGCCACATAATGCTTTCAGATTTTGACCTTTCCCTTAGATGTGCTGTTTCACCCACCCTGATAAGAACATCATTTGATTCTGACCCTTCAAAACGA GCTGCTGGCGGTGCATTTTGTGTTCAGCCTGCCTGTATTGAGCCCTCGTCAGTTTGCATCCAACCTGCATGTTTTTTGCCTCGCATCTTTGCTCAGAAAA ATAAGAAAAAGACCCGAAAATCTCGCCATGACCTTGGGTTGCCAGCTTGTGCACTTCCAGAGCTGGTGGCAGAACCAACAGCTGCTCGGTCCATGTCCTT TGTGGGAACCCATGAATACCTGGCCCCTGAAATTATCAAGGGAGAAGGCCATGGCAGTGCAGTTGATTGGTGGACATTTGGCATTTTCTTGCACGAGCTA TTATATGGTAAAACTCCATTCAAAGGCTCAGGAAACCGAGCTACCTTGTTCAATGTGGTGGGGCAGCAGCTTAGATTCCCAGATTCACCAGCGACTGCTT ATGCTAGCCAAGATTTGATCCGAGGCTTGCTGGTGAAGGAACCTCAGCACAGGCTAGGGGTGAAGAGGGGTGCAACTGAGATCAAGCAGCATCCTTTCTT TGAAAGTGTGAATTGGGCACTAATTAGGTGTAGCACACCACCTGAAGTGCCAAGACCAGTGGAGACCGAGCCCTCGCCAGGCAAGTTCGGTGCAGTTGAC AAAATTGGGGTCGGCATTGTAGGCAGCAGCAGTAAAAGGATGGCAGGGACAGACATGAAGTCTGGGGGTAAATATCTAGACTTCGAGTTCTTTTAG
AA sequence Show only first row Show all	>Potri.002G137700.4 pacid=42778786 polypeptide=Potri.002G137700.4.p locus=Potri.002G137700 ID=Potri.002G137700.4.v4.1 annot-version=v4.1 MERIAESKALPAKLPVASQVSSRAYVVSGREVSQAPKLQTGLVRDVAGRFNAHQSQITDFPVPVRPWKGKDSAAIEDDLMLDVVVTSKGSGDSFDEGEPS SFSGASHPPEPIDTDLIMKTVYVPISQKKAEPGCLVKSMSVKGPFLEDLSIRVSPKKPSPVILSPAESLIEEPNDLLVLPSPFTVPRRSQNTENSLLPPD SEEKECVWDASLPPSGNVSPHSSIDSTGVVTAMSIVNSCASTYRSDVITSDGMLTIDRNCESTKGSVSVRGDSLESAKTSVSRASDSSGLSDDSNWSNIT GSANKPHKGNDPRWNAILAIRARDGILGMSHFRLFKRLGCGDIGSVYLSELSGTRCFFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFE TDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEHAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRTSFDSDPSKR AAGGAFCVQPACIEPSSVCIQPACFLPRIFAQKNKKKTRKSRHDLGLPACALPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHEL LYGKTPFKGSGNRATLFNVVGQQLRFPDSPATAYASQDLIRGLLVKEPQHRLGVKRGATEIKQHPFFESVNWALIRCSTPPEVPRPVETEPSPGKFGAVD KIGVGIVGSSSKRMAGTDMKSGGKYLDFEFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44830			Protein kinase superfamily pro...		Potri.002G137700 [exp]	0	1
AT2G28150			Domain of unknown function (DU...		Potri.004G216200 [exp]	1.73	0.8666
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.003G157300 [exp]	4.47	0.8943
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.014G067000 [exp]	9.38	0.8698
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Potri.010G205400 [exp]	12.04	0.8598
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059300 [exp]	12.48	0.8063
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	13.85	0.8604
AT5G06850			C2 calcium/lipid-binding plant...		Potri.016G049300 [exp]	16.06	0.8543
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.010G102700 [exp]	17.97	0.8372
AT1G65810			P-loop containing nucleoside t...		Potri.008G143000 [exp]	18.16	0.8116
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.001G073600 [exp]	18.65	0.8468

Compare expression of checked genes

Potri.002G137700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.