Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02120 459 / 5e-158 VAD1 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) AT3G59660 63 / 2e-10 C2 domain-containing protein / GRAM domain-containing protein (.1) AT1G03370 49 / 9e-06 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT5G50170 47 / 2e-05 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G047600 [exp] 712 / 0 AT1G02120 533 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Potri.013G127000 [exp] 64 / 7e-11 AT3G59660 867 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Potri.015G083500 [exp] 52 / 7e-07 AT5G50170 1109 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.006G003200 [exp] 44 / 0.0003 AT1G03370 1372 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.016G003900 [exp] 43 / 0.0004 AT1G03370 1378 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028209 [exp] 483 / 2e-166 AT1G02120 536 / 0.0 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10042913 [exp] 460 / 1e-157 AT1G02120 483 / 2e-164 VASCULAR ASSOCIATED DEATH1, GRAM domain family protein (.1) Lus10025600 [exp] 57 / 2e-08 AT3G59660 761 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10027067 [exp] 57 / 2e-08 AT3G59660 714 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10037679 [exp] 51 / 2e-06 AT5G50170 1097 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10015665 [exp] 50 / 2e-06 AT5G50170 1099 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10001915 [exp] 50 / 4e-06 AT1G03370 1438 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10003910 [exp] 49 / 6e-06 AT1G03370 694 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF02893 [poplar] [flax] GRAM GRAM domain CL0209 [poplar] [flax] Bet_v_1_like PF16016 [poplar] [flax] VASt VAD1 Analog of StAR-related lipid transfer domain
Representative CDS sequence Show only first row Show all	>Potri.002G137800.15 pacid=42779399 polypeptide=Potri.002G137800.15.p locus=Potri.002G137800 ID=Potri.002G137800.15.v4.1 annot-version=v4.1 ATGAATTCTTCCGCTTCAAAATCAGCAACTGACGCCGCATCTGAATCATCTTCCTCTTCTTTCGCTGCCGAGACGCCTGATTTCAACGATCACTCAAATG CTTCTCCCATTCCTAACCGTGAAATCGATTATCAGTCACCGGCAGCAGCGAGGAGTGAAGAGTATAGGCAACTGTTTCGTCTTCCCCTGGAAGAAGTCCT TGTACAACACTTTAATTGTGCATACCAAGGAAGTATTCTTCTTCAGGGGCATATGTACCTTTTTGTACATTATATTTGCTTTTATTCAAAAATATTTGGA TTTGAGACAAAGAAAATAATCCCTTTCCATGAAGTTACGAGTGTAAAAAGAGCAAAGACAGCTGGGATCTTCCCTAATGCAATAGAAGTTTTTGCCGGAG GAAAGAAGTACTTCTTTGCATCATTTCTCTCTCGTGAGGAAGCTTTGAATCTCATCAAGGATGGATGGTTACAACATGGTAATGGTTCCAATTTGATCGC AGAACAACAGGATTTAATTTCTGTATCCAGTAGCCTAGATAATGGACCTGTTGTGATTGAAAAGGTGAATAGCTTCAAGCAAACCAGTGAATTAGATTCC CCTGACAGACAAAAGGCTACTGCTCCTTCGCCTGATTCTGAATTTTCACCATCCGTTGAAAAGGGCAGTGTCTCCATGATACAAATTCAAGTAGCAGATG AATTGGAACAGGATGTTGAACTAGTTAGAAACACCGACCCTTCATCTTCAGCAACTTTGGCATGGAATGTGGAAAATTTCAACGCACCTCAGATACGTGA ATCTTTTAAAGAAGTTGGACAGACAAAGTTTCCGATAAAGGTAGAGGAGTTCTTTTATTTGTTCTTTTCAGATGCTGCTGCTAAATTTGTTGAATCTTTT CATAGTAGATGTGGAGATAAAGATTTCAGGTGCTCTTTATGGTACATAGATGACAAATCTGGGCATGCTCGTGATGTCTCTTTTCAGCATCCTATCAAAA TATATTTTGGTGCAAAATTTGGCAGCTGCCAGGAAGTCCAGAAATTTCGAGTCTACAGAAACAGTCATTTGATTATCGAGACATCACAGGAGATCAGTGA CGTCCGTTTTGGAGATTGTTTTCGCGTTGAGGGACTATGGGATGTGACTAGAGATGGTGATGGATCGAATGAAGGATGCATTTTGCGGATATATGTGAAC GTTGTATTCAGCAAGAAAACTATTTTTAAAGGGAAGATAGTGCAGTCTACTGTACAAGAATGTCAAGAAACTTCTGCAATATGGATAAACCATGCACATG AATTGTTGAAGTAG
AA sequence Show only first row Show all	>Potri.002G137800.15 pacid=42779399 polypeptide=Potri.002G137800.15.p locus=Potri.002G137800 ID=Potri.002G137800.15.v4.1 annot-version=v4.1 MNSSASKSATDAASESSSSSFAAETPDFNDHSNASPIPNREIDYQSPAAARSEEYRQLFRLPLEEVLVQHFNCAYQGSILLQGHMYLFVHYICFYSKIFG FETKKIIPFHEVTSVKRAKTAGIFPNAIEVFAGGKKYFFASFLSREEALNLIKDGWLQHGNGSNLIAEQQDLISVSSSLDNGPVVIEKVNSFKQTSELDS PDRQKATAPSPDSEFSPSVEKGSVSMIQIQVADELEQDVELVRNTDPSSSATLAWNVENFNAPQIRESFKEVGQTKFPIKVEEFFYLFFSDAAAKFVESF HSRCGDKDFRCSLWYIDDKSGHARDVSFQHPIKIYFGAKFGSCQEVQKFRVYRNSHLIIETSQEISDVRFGDCFRVEGLWDVTRDGDGSNEGCILRIYVN VVFSKKTIFKGKIVQSTVQECQETSAIWINHAHELLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.002G137800 [exp]	0	1
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	1.41	0.8649
AT3G08570			Phototropic-responsive NPH3 fa...		Potri.016G139900 [exp]	2.82	0.8563
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	3.87	0.8583	Pt-SPY.1
AT1G27900			RNA helicase family protein (....		Potri.010G057200 [exp]	4.24	0.8399
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Potri.003G182601 [exp]	9.74	0.8506
AT3G14460			LRR and NB-ARC domains-contain...		Potri.014G005400 [exp]	10.90	0.8231
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154601 [exp]	10.95	0.8041
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.004G134700 [exp]	11.74	0.7842
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Potri.015G014900 [exp]	17.46	0.7773
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G105150 [exp]	19.39	0.8222

Compare expression of checked genes

Potri.002G137800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.