Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60300 340 / 1e-115 RWD domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G048000 [exp] 191 / 6e-60 AT3G60300 163 / 6e-49 RWD domain-containing protein (.1.2) Potri.007G128300 [exp] 42 / 0.0005 AT3G59410 1610 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009773 [exp] 310 / 6e-104 AT3G60300 315 / 2e-105 RWD domain-containing protein (.1.2) Lus10024759 [exp] 305 / 1e-101 AT3G60300 311 / 3e-104 RWD domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF05773 [poplar] [flax] RWD RWD domain
Representative CDS sequence Show only first row Show all	>Potri.002G138000.1 pacid=42777966 polypeptide=Potri.002G138000.1.p locus=Potri.002G138000 ID=Potri.002G138000.1.v4.1 annot-version=v4.1 ATGGCCGAAGAAGAAGTTTTAATAGAAGTAGAAGCGGTGCTAGCCATGTATGGCGACGATTGTGTGATTCTTGAGTCTTTCCCTCCTCATCTTCACCTCC ACATCAAGCCCAGAACCGCCGATATCTCCTCCCAACAGTTCGTGGAAGCAGTAATTGGGATACGAGCAGGTCCTCAGTACCCAAGCAAACCACCATGGAT TGATCTCATAGAATCCAAGGGTCTTGATGGAGAAAGGCAAAAGCAATTGATAACTGGCATACAAGAGAAAGCATGTGAACTGTCCTCTTGTCTGATGCTT GTAGCACTTTGTGAGGAAGCGGTGGAGAAGCTCACTGTTATGAATCACCCAGATGGTGATTGTCCACTGTGTATGTGCCCCTTTGTCCCAGAAGATGAAC AGGATGAAGCCTTGCCATTTATGAAGTTGATGTCTTGTTTCCATTGTTTTCACTGCGAATGCATTGTGAGGTGGTGGAATTGGATCCAAAAGGAGAAAGA AAGCAACACTAGCACCTCATCTTCCACAACTTTACTGCAAATCAAAGAGATGGGAAATCAGAATGGGTTATCAGATGTGCATGGAGTACTGGAAGAAAGA ATGGGGGACTGTCCAGTTTGTAGAAAGGTTTTCCATGTCAAGGATTTTGAACATGTGCTTGACCTGGTTGGAACTCAAGCTTCTCAATTGGATTCTGAAG CAGAGATCAAATACGAGGAGAAGCTCCTTCATTCTGATTCAGAGAACTTCAGAAGACAGAAATTTGAGGCCATATTGAAATTACAGCAGGAAAACAGCGG CTTAATTGAACCAAAAAGAGAGATAGTGGTTGTGCCTGGTATATATCTTCCGCAACGAGCCACATCAGCTGCACAGACAGTGAACAAAGAAACCGCTGAG CATCAAGGAACAGAAGCCAGACCCTCCACGGAAACAAATTTGGGTAGTTCCTTAAATAGACCTCGTCCTAGAGAATCCAGGAACTCAGGCAGGAGGCAGG GAGTACGAAATTCAAGAAGACCAGTCAGTCAGTGGGTCAGAAGAGAGAATGGTACTGCAGATTAA
AA sequence Show only first row Show all	>Potri.002G138000.1 pacid=42777966 polypeptide=Potri.002G138000.1.p locus=Potri.002G138000 ID=Potri.002G138000.1.v4.1 annot-version=v4.1 MAEEEVLIEVEAVLAMYGDDCVILESFPPHLHLHIKPRTADISSQQFVEAVIGIRAGPQYPSKPPWIDLIESKGLDGERQKQLITGIQEKACELSSCLML VALCEEAVEKLTVMNHPDGDCPLCMCPFVPEDEQDEALPFMKLMSCFHCFHCECIVRWWNWIQKEKESNTSTSSSTTLLQIKEMGNQNGLSDVHGVLEER MGDCPVCRKVFHVKDFEHVLDLVGTQASQLDSEAEIKYEEKLLHSDSENFRRQKFEAILKLQQENSGLIEPKREIVVVPGIYLPQRATSAAQTVNKETAE HQGTEARPSTETNLGSSLNRPRPRESRNSGRRQGVRNSRRPVSQWVRRENGTAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60300			RWD domain-containing protein ...		Potri.002G138000 [exp]	0	1
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Potri.006G075300 [exp]	1.41	0.7067
AT2G26210			Ankyrin repeat family protein ...		Potri.018G047000 [exp]	8.94	0.6561
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Potri.006G251800 [exp]	16.61	0.6377	Pt-ASTRAY.2
AT2G18465			Chaperone DnaJ-domain superfam...		Potri.001G308900 [exp]	40.69	0.6030
AT3G52220			unknown protein		Potri.010G240300 [exp]	41.89	0.6490
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G441180 [exp]	54.19	0.6252
AT4G33690			unknown protein		Potri.009G082200 [exp]	67.70	0.5784
AT3G49645			unknown protein		Potri.017G091300 [exp]	72.16	0.5925
AT2G18600			Ubiquitin-conjugating enzyme f...		Potri.014G041466 [exp]	78.42	0.6281
AT3G11397		PRA1.A3	prenylated RAB acceptor 1.A3 (...		Potri.008G060400 [exp]	83.07	0.6106

Compare expression of checked genes

Potri.002G138000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.