Plant FIBer expression Database

Potri.002G138200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72100 41 / 0.0005 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G138200.5 pacid=42776785 polypeptide=Potri.002G138200.5.p locus=Potri.002G138200 ID=Potri.002G138200.5.v4.1 annot-version=v4.1
ATGGCGTCCGATTCAGAGAAGGATGCTTCCGAAGGGCTTGGAGGTGCTCGGAACACAGGCGAGAAAGATCATAAACCTGGAAGTTCTAGGAAATTAACTG
AAGCTGAGAGAAAAAGGAAACAAGAATGCCAGAGGAATTTTAATGCTAGAAAGAAGCAAAGGATTAAAAGCACAGAGGAAGAGGTGGAAACTCTCAAAGA
ACAGCTTGCCTACTACAAAGGGCAGGCAGATGCCCACTACAAAGGCATCCAGGAACTTGGAAAAGTTGTTAACAGCGTTGGAGAAGTTGGAAAAAAACAA
ACTGCTCAAATTGACAAGCTTTGCGAGCTAATTATCGAAGGGAAACACTCTGCAGGTAGAAGGGAGTGTTGGGGAAGCACATCTTCCAGCACAGAGGTGC
TAGAAGGGGCTCCTAACCAGCTGGCCTTCAACAGTCTCAAGGAGCGTTACATTGCCTCTGAAACACGCCACGCACAGGAGAAAGTTGCCACAGAAGCACG
CCACGCAAAGGAGATGGCTGCCATAAAAGCACACCATGCCCAGGAGATGGCTGCCAAAGAAGCACACCATGCTCAGGAGATGGCTGCCAAAGAAGCACAC
CATGCCCAGGAGATGGCTGCCAAAGAAGCACACCATGCTCAGGAGATGGCTGCAGTCAGGACAGAGTACGGCCTAGACGTGGAGAACGACATGTTGCAGG
CGCTTGCAGGAGCCTCACCAGGCTTCGATTTTGCTGATCAGTTCGTGAATTATAAGTAG
AA sequence
>Potri.002G138200.5 pacid=42776785 polypeptide=Potri.002G138200.5.p locus=Potri.002G138200 ID=Potri.002G138200.5.v4.1 annot-version=v4.1
MASDSEKDASEGLGGARNTGEKDHKPGSSRKLTEAERKRKQECQRNFNARKKQRIKSTEEEVETLKEQLAYYKGQADAHYKGIQELGKVVNSVGEVGKKQ
TAQIDKLCELIIEGKHSAGRRECWGSTSSSTEVLEGAPNQLAFNSLKERYIASETRHAQEKVATEARHAKEMAAIKAHHAQEMAAKEAHHAQEMAAKEAH
HAQEMAAKEAHHAQEMAAVRTEYGLDVENDMLQALAGASPGFDFADQFVNYK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G138200
[exp]
0 1
AT3G07930 DNA glycosylase superfamily pr... Potri.014G189400
[exp]
13.34 0.6123
AT4G31720 STG1, TAFII15, ... TBP-ASSOCIATED FACTOR 10, SALT... Potri.018G013300
[exp]
16.37 0.6323
AT4G15520 tRNA/rRNA methyltransferase (S... Potri.008G198200
[exp]
17.74 0.5706
AT5G24400 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, E... Potri.012G024400
[exp]
19.79 0.6037
AT3G04830 Protein prenylyltransferase su... Potri.013G038700
[exp]
22.47 0.6036
AT5G41210 GSTU12, GST10, ... glutathione S-transferase THET... Potri.003G125800
[exp]
30.98 0.5382 ATGSTT1.2
AT5G37480 unknown protein Potri.013G065200
[exp]
31.24 0.5550
AT5G59460 scarecrow-like transcription f... Potri.009G033400
[exp]
31.46 0.5072
AT2G20280 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.008G045600
[exp]
50.34 0.5559
AT2G36930 C2H2ZnF zinc finger (C2H2 type) family... Potri.016G093500
[exp]
69.28 0.5441

Potri.002G138200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.